PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.08G065300.1.p
Common NameGLYMA_08G065300, LOC100779119
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family MIKC_MADS
Protein Properties Length: 242aa    MW: 28005 Da    PI: 10.05
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.08G065300.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF91.63.8e-291059251
                         ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
               SRF-TF  2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                         rien++nrqvtf+kRrng+lKK  ELS+LCdaev vi+fsstgklyeys+
  Glyma.08G065300.1.p 10 RIENSTNRQVTFCKRRNGLLKKTRELSILCDAEVGVIVFSSTGKLYEYSN 59
                         8***********************************************95 PP
2K-box80.93e-2781171999
                K-box   9 leeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkkl 98 
                           +++  + +q e+a L+++++ Lq+++R+l+Ge+L+ L +++L++Le+qL+ sl+++R+kK++++ ++i+elq+k   ++++n++L+kk+
  Glyma.08G065300.1.p  81 DATSAIKFWQGEAASLRQQLQHLQENHRQLMGEELSGLGINQLKHLENQLQMSLNNVRNKKDHIFSDEIKELQQKGSLIRRQNEELHKKI 170
                          4567789**********************************************************************************9 PP

                K-box  99 e 99 
                          +
  Glyma.08G065300.1.p 171 D 171
                          6 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006632.015161IPR002100Transcription factor, MADS-box
SMARTSM004324.0E-40160IPR002100Transcription factor, MADS-box
CDDcd002657.85E-44277No hitNo description
SuperFamilySSF554551.83E-31278IPR002100Transcription factor, MADS-box
PROSITE patternPS003500357IPR002100Transcription factor, MADS-box
PRINTSPR004043.5E-29323IPR002100Transcription factor, MADS-box
PfamPF003197.1E-261057IPR002100Transcription factor, MADS-box
PRINTSPR004043.5E-292338IPR002100Transcription factor, MADS-box
PRINTSPR004043.5E-293859IPR002100Transcription factor, MADS-box
PfamPF014869.8E-2584170IPR002487Transcription factor, K-box
PROSITE profilePS5129714.99386176IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 242 aa     Download sequence    Send to blast
MGRGKIPIRR IENSTNRQVT FCKRRNGLLK KTRELSILCD AEVGVIVFSS TGKLYEYSNT  60
SMETIIERFN KQNNNHHRLM DATSAIKFWQ GEAASLRQQL QHLQENHRQL MGEELSGLGI  120
NQLKHLENQL QMSLNNVRNK KDHIFSDEIK ELQQKGSLIR RQNEELHKKI DLIHNENAEL  180
KKVIEARHKE EERAALKPPC AIKNRYDTLD PNSLQQRQSQ PQPSEPSAEV MIMGYSLKLK  240
M*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5f28_A3e-21176176MEF2C
5f28_B3e-21176176MEF2C
5f28_C3e-21176176MEF2C
5f28_D3e-21176176MEF2C
Search in ModeBase
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Ubiquitous. {ECO:0000269|PubMed:14701936}.
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.08G065300.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003532587.11e-179MADS-box transcription factor 23 isoform X1
RefseqXP_028247219.11e-179MADS-box transcription factor 23-like isoform X1
SwissprotQ6EP497e-82MAD27_ORYSJ; MADS-box transcription factor 27
TrEMBLA0A0R0ISX61e-177A0A0R0ISX6_SOYBN; Uncharacterized protein
TrEMBLA0A445JB471e-177A0A445JB47_GLYSO; MADS-box transcription factor 27
STRINGGLYMA08G06981.11e-113(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF8912560
Representative plantOGRP1617761
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G57230.13e-74AGAMOUS-like 16
Publications ? help Back to Top
  1. Puig J, et al.
    Analysis of the expression of the AGL17-like clade of MADS-box transcription factors in rice.
    Gene Expr. Patterns, 2013 Jun-Jul. 13(5-6): p. 160-70
    [PMID:23466806]
  2. Yu C, et al.
    The effects of fluctuations in the nutrient supply on the expression of five members of the AGL17 clade of MADS-box genes in rice.
    PLoS ONE, 2014. 9(8): p. e105597
    [PMID:25140876]