PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.08G078100.1.p
Common NameGLYMA_08G078100
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family WRKY
Protein Properties Length: 182aa    MW: 20189.5 Da    PI: 9.3129
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.08G078100.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY64.81.5e-20140179139
                          ---SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEE CS
                 WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkve 39 
                          ++Dg++WrKYGqK  kg+++pr+YYrCt a gCpv+k+v+
  Glyma.08G078100.1.p 140 MNDGCQWRKYGQKIAKGNPCPRAYYRCTVApGCPVRKQVQ 179
                          58***************************99********8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.802.5E-21125179IPR003657WRKY domain
SuperFamilySSF1182908.89E-19133179IPR003657WRKY domain
PROSITE profilePS5081120.426135181IPR003657WRKY domain
SMARTSM007741.3E-13140181IPR003657WRKY domain
PfamPF031062.0E-18141179IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 182 aa     Download sequence    Send to blast
MKFSAIQENN KRKDHEISLS LQDIATTSGE GPSRINEIFN KQIRQSAPSP PHTTDHDDSL  60
SESELGLSLR LQPSTSHHKE SDVGNNNKED KNDQQLASFA SVQNKLQRTH ELPGITTHAA  120
FPPNRKARVS VRARCEAATM NDGCQWRKYG QKIAKGNPCP RAYYRCTVAP GCPVRKQVQD  180
V*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A7e-14130179755Probable WRKY transcription factor 4
2lex_A7e-14130179755Probable WRKY transcription factor 4
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.08G078100.1.p
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0968481e-141BT096848.1 Soybean clone JCVI-FLGm-15D10 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028246643.11e-130probable WRKY transcription factor 9
TrEMBLA0A0R0IPH31e-134A0A0R0IPH3_SOYBN; Uncharacterized protein
STRINGGLYMA08G08290.21e-132(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF93203141
Representative plantOGRP1417875
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68150.12e-37WRKY DNA-binding protein 9