PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.08G078700.1.p
Common NameGLYMA_08G078700, LOC102669548
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family WRKY
Protein Properties Length: 430aa    MW: 47364.4 Da    PI: 5.0804
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.08G078700.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY98.93.2e-31241299259
                          --SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
                 WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                          +D ++WrKYGqK++kgs++pr+YYrC+s+ gCp++k+vers++dp++++itY++eHnh+
  Glyma.08G078700.1.p 241 SDLWAWRKYGQKPIKGSPYPRGYYRCSSSkGCPARKQVERSRTDPNMLVITYTSEHNHP 299
                          699************************998****************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.801.5E-31234301IPR003657WRKY domain
PROSITE profilePS5081133.361235301IPR003657WRKY domain
SuperFamilySSF1182901.11E-26238301IPR003657WRKY domain
SMARTSM007741.5E-38240300IPR003657WRKY domain
PfamPF031063.8E-26242299IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 430 aa     Download sequence    Send to blast
MCNILGTIME NYQGDLSDII RASGASYGSC STGTSSSEAA NPFSRNYHLQ FSSDPMIFSS  60
VLEGFNSNFG DPFSNMRDPF LHELDLPLSA YFNSTSSSAE IKSSGALEEA TCFGGGVVAG  120
SSSSSNSCVL AQKILDEDDM RRPCNSILSN MIQISPNDKL PISPVVDSLS RPFKPSGAVS  180
GHNMIDAKTS SDYCLVDNTK VQISSPRNPG LKRRKSLAKK SICVPAPAAP NSRQSGEVVP  240
SDLWAWRKYG QKPIKGSPYP RGYYRCSSSK GCPARKQVER SRTDPNMLVI TYTSEHNHPW  300
PTHRNALAGS SRSQPSKNNN IAASKNEEEE EEESNSDSNK VNNNVFVREE EKQLEMDDVE  360
FCDIGVPYYR PISKMNNYLQ LDQGLFAEFG EIEKDQSVNL LSPPQGFDDQ QRESNALDSF  420
HFFDWRGDI*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5w3x_B5e-24215302280Disease resistance protein RRS1
5w3x_D5e-24215302280Disease resistance protein RRS1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.08G078700.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150348e-97AP015034.1 Vigna angularis var. angularis DNA, chromosome 1, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006584998.10.0probable WRKY transcription factor 35
TrEMBLI1KR980.0I1KR98_SOYBN; Uncharacterized protein
STRINGGLYMA08G08340.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF54303454
Representative plantOGRP1417875
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G30650.14e-74WRKY DNA-binding protein 14