PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.08G097900.1.p
Common NameGLYMA_08G097900, LOC100802134
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family TCP
Protein Properties Length: 469aa    MW: 51561.1 Da    PI: 7.9755
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.08G097900.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP125.55.8e-39501982136
                  TCP   2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec.eaesssssas....... 83 
                           g+kdrhsk+ T++g+RdRRvRls+++a++f+dLqd+LG+d++sk++eWL++ a  ai el+++++ + +   ++++++++++       
  Glyma.08G097900.1.p  50 SGGKDRHSKVMTSKGLRDRRVRLSVNTAIQFYDLQDRLGYDQPSKAVEWLIKSASDAISELPSLNNFPDTPQsDDHEKRENTAdvavgvv 139
                          689*************************************************************55555333233333333332444444 PP

                  TCP  84 .nsssg......kaaksaakskksqksaasalnlak.esrakararare.rtrekmriknkl 136
                               +       + +++a+s++s++s+ s l+l++ + r kar+rare  t+ek + k+k+
  Glyma.08G097900.1.p 140 dG---EngngqnLSLAKSACSSNSETSKGSGLSLSRsDIRVKARERARErTTKEKEKEKEKN 198
                          41...04455656677777999999999999*****999**********5566666666554 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF036345.0E-4051193IPR005333Transcription factor, TCP
PROSITE profilePS5136931.12852110IPR017887Transcription factor TCP subgroup
PROSITE profilePS5137010.384173191IPR017888CYC/TB1, R domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009637Biological Processresponse to blue light
GO:0009965Biological Processleaf morphogenesis
GO:0030154Biological Processcell differentiation
GO:0045962Biological Processpositive regulation of development, heterochronic
GO:1903508Biological Processpositive regulation of nucleic acid-templated transcription
GO:2000306Biological Processpositive regulation of photomorphogenesis
Sequence ? help Back to Top
Protein Sequence    Length: 469 aa     Download sequence    Send to blast
MEEEDEILQA RACKLPRRRG SDGESTNSRF HSSSWHHHNS SRIIRVSRAS GGKDRHSKVM  60
TSKGLRDRRV RLSVNTAIQF YDLQDRLGYD QPSKAVEWLI KSASDAISEL PSLNNFPDTP  120
QSDDHEKREN TADVAVGVVD GENGNGQNLS LAKSACSSNS ETSKGSGLSL SRSDIRVKAR  180
ERARERTTKE KEKEKEKNDE SHRHHHNVVV VPHHNHNVNL VSQTASFTEL LTGSDPNKGC  240
DEANNNMMFN KAAGRLQWCS STTPMDYFLG LSSSRTTTHN HNHLHHHQYS SSSSSGFSLA  300
QIQLGHSLPE AMNHVSAFNN NVSGDNHNHS SSDPHLQQQH LSLIPDHLMS AVVTSSAASS  360
HHHHHHQPSG NDYNLNSTMS SGLAGYNRGT LQSNSPSLLP HSQRFSPIDG STVPFFIGAA  420
SSAAAVAAPA MENNNNNNHH QHQFSSVFDG SRLQLYYGHS DQKGKAKN*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5zkt_A1e-2357111155Putative transcription factor PCF6
5zkt_B1e-2357111155Putative transcription factor PCF6
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Gma.329010.0cotyledon| leaf| root
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00006PBMTransfer from 493022Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.08G097900.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150383e-62AP015038.1 Vigna angularis var. angularis DNA, chromosome 5, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003531162.10.0transcription factor TCP2
RefseqXP_006585087.10.0transcription factor TCP2
RefseqXP_006585088.10.0transcription factor TCP2
RefseqXP_006585089.10.0transcription factor TCP2
RefseqXP_014634294.10.0transcription factor TCP2
RefseqXP_014634295.10.0transcription factor TCP2
RefseqXP_014634296.10.0transcription factor TCP2
RefseqXP_014634297.10.0transcription factor TCP2
RefseqXP_014634298.10.0transcription factor TCP2
TrEMBLI1KRV60.0I1KRV6_SOYBN; Uncharacterized protein
STRINGGLYMA08G10350.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF40193156
Representative plantOGRP18015163
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G18390.28e-50TEOSINTE BRANCHED 1, cycloidea and PCF transcription factor 2