PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.08G100900.2.p
Common NameGLYMA_08G100900, LOC100806394
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family ARR-B
Protein Properties Length: 510aa    MW: 57431.1 Da    PI: 4.8198
Description ARR-B family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.08G100900.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like70.33.1e-22130182155
              G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                          k+r++W+ +LH++Fv+av+q+ G +   Pk+il+lm+v+ Lt+e+v+SHLQkYRl
  Glyma.08G100900.2.p 130 KARVVWSVDLHQKFVKAVNQI-GFD-IGPKKILDLMNVPWLTRENVASHLQKYRL 182
                          68*******************.777.78**************************8 PP
2Response_reg333.1e-1215653109
                          CTTSEHHHHHHHHHHHTTTSEEEEEESTTTHHHHHHHHHTTESEEEESS--HHHHHH CS
         Response_reg  53 mpgmdGlellkeireeepklpiivvtahgeeedalealkaGakdflsKpfdpeelvk 109
                          mp+mdG++ll++   e  +lp+i+++  ge + + + ++ Ga d+l Kp+ ++el++
  Glyma.08G100900.2.p   1 MPDMDGFKLLEQVGLEM-DLPVIMMSVDGETSRVMKGVQHGACDYLLKPIRMKELRN 56 
                          9************6644.8***********************************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd001561.58E-12162No hitNo description
PROSITE profilePS5011024.176162IPR001789Signal transduction response regulator, receiver domain
SuperFamilySSF521722.28E-15170IPR011006CheY-like superfamily
PfamPF000723.7E-9157IPR001789Signal transduction response regulator, receiver domain
Gene3DG3DSA:3.40.50.23002.8E-21194No hitNo description
SuperFamilySSF466894.12E-15128186IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.602.6E-25129187IPR009057Homeodomain-like
TIGRFAMsTIGR015578.5E-20130182IPR006447Myb domain, plants
PfamPF002491.2E-7132181IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000160Biological Processphosphorelay signal transduction system
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 510 aa     Download sequence    Send to blast
MPDMDGFKLL EQVGLEMDLP VIMMSVDGET SRVMKGVQHG ACDYLLKPIR MKELRNIWQH  60
VFRKRMHEAR DFESHEGFDF EGIHLMRNGS DHSDDGNLFA VEETTSIKKR KDADNKHDDK  120
EFGDHFPTKK ARVVWSVDLH QKFVKAVNQI GFDIGPKKIL DLMNVPWLTR ENVASHLQKY  180
RLYLSRLQKE NDQKSSSSGI KHSDSPSKDL GSFSFLNTAN KQQNDIATDS FSYSDGTLLI  240
QMDATSYEGD LKGIVSEPTT EKRRASTSEI PDPKVQKSSQ KSLNKPFTSV ESSEANHAVF  300
DCTIPTEYSW SEFPKGPLKE EQKTPVQLED SLCQLPLHGT QHHIQIDQSQ SIASINSNPS  360
ITEEEVAAKL ETKPLYAGYE SDYVNPVSSI GSAVEAFRSQ SKSLMVSDQS SEPTFTSNLS  420
LKTQGFNLDC ISDLDFYQRN LLLGGEVASA PLDEDLNFFL LQSECYNMNF GLQNIDMSEY  480
YDPRLTAEVP SHFYDSADYS SVDQSLFIA*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1irz_A2e-15129187463ARR10-B
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.08G100900.2.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014634317.10.0two-component response regulator ORR26
TrEMBLA0A0R0IJW00.0A0A0R0IJW0_SOYBN; Uncharacterized protein
STRINGGLYMA08G10650.10.0(Glycine max)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G67710.12e-78response regulator 11