PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.08G105400.1.p
Common NameAGL3L, GLYMA_08G105400
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family MIKC_MADS
Protein Properties Length: 187aa    MW: 20964.2 Da    PI: 8.9464
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.08G105400.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF88.92.7e-28958150
                         S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE CS
               SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeys 50
                         krienks rq+tfskRrng++KKA ELS+LCda+va++ifsstgklye +
  Glyma.08G105400.1.p  9 KRIENKSTRQITFSKRRNGLMKKARELSILCDAKVALLIFSSTGKLYELC 58
                         79*********************************************966 PP
2K-box424e-15791611092
                K-box  10 eeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenk 92 
                          +++k+++l+ e+a + +     q  +Rh+   +Le Ls+ +L++Le+  + +l++iRs K++l++e++ +l+kk ++l+++n 
  Glyma.08G105400.1.p  79 TDTKSQELCFEIADIWSGSAFSQMIKRHFGVSELEHLSVSDLMELEKLTHAALSRIRSAKMRLMMESVVNLKKKIEALEKTND 161
                          5677888888888888888888888999999************************************************9985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004323.3E-37160IPR002100Transcription factor, MADS-box
PROSITE profilePS5006630.557161IPR002100Transcription factor, MADS-box
CDDcd002658.74E-35277No hitNo description
SuperFamilySSF554556.02E-30289IPR002100Transcription factor, MADS-box
PRINTSPR004046.1E-28323IPR002100Transcription factor, MADS-box
PfamPF003191.1E-251056IPR002100Transcription factor, MADS-box
PRINTSPR004046.1E-282338IPR002100Transcription factor, MADS-box
PRINTSPR004046.1E-283859IPR002100Transcription factor, MADS-box
PfamPF014863.1E-1280161IPR002487Transcription factor, K-box
PROSITE profilePS512977.94383178IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 187 aa     Download sequence    Send to blast
MGKKKVEIKR IENKSTRQIT FSKRRNGLMK KARELSILCD AKVALLIFSS TGKLYELCNG  60
DSLAEVVQQY WDHLGASGTD TKSQELCFEI ADIWSGSAFS QMIKRHFGVS ELEHLSVSDL  120
MELEKLTHAA LSRIRSAKMR LMMESVVNLK KKIEALEKTN DVNNVVTRSI DCDQTDGVTH  180
NLFPGL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5f28_A1e-18173172MEF2C
5f28_B1e-18173172MEF2C
5f28_C1e-18173172MEF2C
5f28_D1e-18173172MEF2C
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Gma.113620.0flower| leaf| meristem| pod| vegetative bud
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.08G105400.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHQ6366090.0HQ636609.1 Glycine max agamous-like 3 protein (AGL3L) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001241059.11e-136agamous-like MADS-box protein AGL3-like
RefseqXP_028243466.11e-136protein MADS AFFECTING FLOWERING 5-like
TrEMBLA0A445JCT21e-134A0A445JCT2_GLYSO; Agamous-like MADS-box protein AGL3 isoform A
TrEMBLG3E7M71e-134G3E7M7_SOYBN; Agamous-like 3 protein
STRINGGLYMA08G11110.11e-135(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF11933360
Representative plantOGRP1617761
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G03710.31e-39MIKC_MADS family protein