PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.08G124200.3.p
Common NameGLYMA_08G124200
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family NF-YA
Protein Properties Length: 207aa    MW: 23028.2 Da    PI: 7.2918
Description NF-YA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.08G124200.3.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1CBFB_NFYA105.25.5e-33111167158
            CBFB_NFYA   1 deplYVNaKQyqrIlkRRqkRakleeekkldeksrkpylheSRhkhAlrRpRgsgGrF 58 
                          +ep++VNaKQy++Il+RRq+Rak+e+e+k+ +++rkpylheSRhkhAlrRpRg+gGrF
  Glyma.08G124200.3.p 111 EEPVFVNAKQYHGILRRRQSRAKAESENKV-IRNRKPYLHESRHKHALRRPRGCGGRF 167
                          69****************************.**************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005212.6E-37109170IPR001289Nuclear transcription factor Y subunit A
PROSITE profilePS5115237.788110170IPR001289Nuclear transcription factor Y subunit A
PfamPF020454.0E-28112167IPR001289Nuclear transcription factor Y subunit A
PRINTSPR006162.3E-24113135IPR001289Nuclear transcription factor Y subunit A
PROSITE patternPS006860115135IPR018362CCAAT-binding factor, conserved site
PRINTSPR006162.3E-24144167IPR001289Nuclear transcription factor Y subunit A
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0016602Cellular ComponentCCAAT-binding factor complex
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 207 aa     Download sequence    Send to blast
MTSAHDLTDN EDDGQQQSES QIQSPSANGI SDPDISTQNV NVQYATPGQL GTGHAMVPPV  60
YPYPDPYYRS IFAPYDTQPY PPQAYSGQPM VHLQLMGIQQ AGVPLPTDAV EEPVFVNAKQ  120
YHGILRRRQS RAKAESENKV IRNRKPYLHE SRHKHALRRP RGCGGRFLNS KKDENQHDDV  180
TSADKSQSNI NLNSNKNDQT SSDRTS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4awl_A4e-22110177168NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT ALPHA
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1151160RHKHALRRPR
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Gma.223810.0flower| leaf
Functional Description ? help Back to Top
Source Description
UniProtStimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.08G124200.3.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0894150.0BT089415.1 Soybean clone JCVI-FLGm-1L22 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001235566.21e-152putative CCAAT-binding transcription factor
RefseqXP_028243632.11e-152nuclear transcription factor Y subunit A-7-like
SwissprotQ84JP13e-72NFYA7_ARATH; Nuclear transcription factor Y subunit A-7
TrEMBLA0A445JDN11e-150A0A445JDN1_GLYSO; Nuclear transcription factor Y subunit A-7 isoform B (Fragment)
TrEMBLA0A445JDP01e-151A0A445JDP0_GLYSO; Nuclear transcription factor Y subunit A-7 isoform A
TrEMBLI1KSM71e-151I1KSM7_SOYBN; Uncharacterized protein
STRINGGLYMA08G13090.11e-152(Glycine max)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G30500.24e-61nuclear factor Y, subunit A7
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Zhao H, et al.
    The Arabidopsis thaliana Nuclear Factor Y Transcription Factors.
    Front Plant Sci, 2016. 7: p. 2045
    [PMID:28119722]