PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.08G141000.2.p
Common NameGLYMA_08G141000, LOC100797721
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family NF-YB
Protein Properties Length: 194aa    MW: 21366.9 Da    PI: 6.6795
Description NF-YB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.08G141000.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YB146.27.2e-461811797
                NF-YB 17 mkkvlPanakiskdaketvqecvsefisfvtseasdkcqrekrktingddllwalatlGfedyveplkvylkkyrelegek 97
                         mk++lPanakisk+aketvqecvsefisf+t+easdkcqrekrktingddllwa++tlGfe+yv plk+yl++yre+egek
  Glyma.08G141000.2.p  1 MKRALPANAKISKEAKETVQECVSEFISFITGEASDKCQREKRKTINGDDLLWAMTTLGFENYVGPLKLYLNNYRETEGEK 81
                         9******************************************************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF471134.35E-32189IPR009072Histone-fold
PfamPF008082.4E-20155IPR003958Transcription factor CBF/NF-Y/archaeal histone domain
Gene3DG3DSA:1.10.20.106.5E-43191IPR009072Histone-fold
PRINTSPR006151.4E-181937No hitNo description
PROSITE patternPS0068502238IPR003956Transcription factor, NFYB/HAP3, conserved site
PRINTSPR006151.4E-183856No hitNo description
PRINTSPR006151.4E-185775No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 194 aa     Download sequence    Send to blast
MKRALPANAK ISKEAKETVQ ECVSEFISFI TGEASDKCQR EKRKTINGDD LLWAMTTLGF  60
ENYVGPLKLY LNNYRETEGE KSSTSMAKQE ELHSPTHQHQ TNIDGVVEIN KLLPHSVAAA  120
TKASDFNNTT FSAGGFYSVG PHQVTAPKSF TEMGGLNGYR ESSIAQSALS ADQIQDASGN  180
RMMPPNLRYR VEW*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4g91_B5e-371761792Transcription factor HapC (Eurofung)
4g92_B5e-371761792Transcription factor HapC (Eurofung)
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.08G141000.2.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150341e-111AP015034.1 Vigna angularis var. angularis DNA, chromosome 1, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003532849.11e-145nuclear transcription factor Y subunit B-10 isoform X1
RefseqXP_014634440.11e-145nuclear transcription factor Y subunit B-8 isoform X2
RefseqXP_028243842.11e-145nuclear transcription factor Y subunit B-10-like isoform X1
RefseqXP_028243843.11e-145nuclear transcription factor Y subunit B-8-like isoform X2
TrEMBLA0A445JEJ61e-144A0A445JEJ6_GLYSO; Nuclear transcription factor Y subunit B-3
TrEMBLK7L6M61e-144K7L6M6_SOYBN; Uncharacterized protein
TrEMBLK7L6M71e-144K7L6M7_SOYBN; Uncharacterized protein
STRINGGLYMA08G14931.11e-145(Glycine max)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G14540.14e-52nuclear factor Y, subunit B3