PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.08G143400.3.p
Common NameGLYMA_08G143400
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family WRKY
Protein Properties Length: 181aa    MW: 20326 Da    PI: 9.999
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.08G143400.3.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY33.21e-10157178122
                          ---SS-EEEEEEE--TT-SS-E CS
                 WRKY   1 ldDgynWrKYGqKevkgsefpr 22 
                          ldDgy+WrKYGqK+vk++++pr
  Glyma.08G143400.3.p 157 LDDGYKWRKYGQKVVKNTQHPR 178
                          59*******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.809.1E-13142178IPR003657WRKY domain
SuperFamilySSF1182907.72E-10149179IPR003657WRKY domain
PROSITE profilePS5081113.253152180IPR003657WRKY domain
PfamPF031062.7E-7158179IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:1901141Biological Processregulation of lignin biosynthetic process
GO:1904369Biological Processpositive regulation of sclerenchyma cell differentiation
GO:0001046Molecular Functioncore promoter sequence-specific DNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 181 aa     Download sequence    Send to blast
MSTTSHPIVH HSLFDEQDQI PTQMGFFSFP TNLTFPPLGC HQSSLKAFSS IAPSSLAISQ  60
QDSASNLTAE TLFSTTAQKS REDLTSSFGG GQFLSLHRSS VNPWALGEVA ECFSSKRSGF  120
DDHHFRISAM KMKKIKARRK VREPRFCFKT MSDVDVLDDG YKWRKYGQKV VKNTQHPRYI  180
*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Gma.268470.0stem
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.08G143400.3.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0909140.0BT090914.1 Soybean clone JCVI-FLGm-5N5 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001237342.21e-130WRKY transcription factor 40
RefseqXP_028246516.11e-130probable WRKY transcription factor 13 isoform X1
SwissprotQ9SVB74e-27WRK13_ARATH; Probable WRKY transcription factor 13
TrEMBLI1KTC01e-132I1KTC0_SOYBN; Uncharacterized protein
STRINGGLYMA08G15210.11e-130(Glycine max)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G39410.13e-21WRKY DNA-binding protein 13