PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Glyma.08G147300.2.p

Common Name

GLYMA_08G147300

Organism

Glycine max

Taxonomic ID

3847

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja

Family

LBD

Protein Properties

Length: 105aa MW: 11969.9 Da PI: 7.5026

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Glyma.08G147300.2.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	28	6.2e-09	24	66	54	96
DUF260 54 redamsslvyeAearardPvyGavgvilklqqqleqlkaelal 96 + ++ l++eA++r++ P+yG++g+i+kl +q+++++ la+ Glyma.08G147300.2.p 24 YVNNLQILYFEAHCRIQGPIYGCAGIIFKLYEQINSAEIALAY 66 45667889***************************99988876 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03195	2.4E-6	27	65	IPR004883	Lateral organ boundaries, LOB

Sequence ? help Back to Top
Protein Sequence Length: 105 aa Download sequence Send to blast
MISFLFFKKK IDIMMSGSKF HHTYVNNLQI LYFEAHCRIQ GPIYGCAGII FKLYEQINSA 60 EIALAYIDIQ TQTACHKLQA ESNFDVLPAQ SSITAKFQWK SELE*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Glyma.08G147300.2.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006595718.1	3e-29	LOB domain-containing protein 24
Refseq	XP_028201029.1	3e-29	LOB domain-containing protein 24-like
TrEMBL	K7L6S0	2e-71	K7L6S0_SOYBN; Uncharacterized protein
STRING	GLYMA08G15591.1	5e-69	(Glycine max)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G26660.1	1e-08	LOB domain-containing protein 24

Link Out ? help Back to Top
Phytozome	Glyma.08G147300.2.p