PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.08G148500.2.p
Common NameGLYMA_08G148500, LOC100804250
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family bHLH
Protein Properties Length: 283aa    MW: 31420.9 Da    PI: 7.3401
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.08G148500.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH26.79.8e-09756154
                         CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
                  HLH  1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54
                         r++ +  rE+ RRdr+N+ f eL  +l ++     +K++Ka+i   +++ +k+L
  Glyma.08G148500.2.p  7 RKTQKADREKLRRDRLNEQFVELGNILDPD----RPKNDKATIIGDTIQLLKDL 56
                         6788999********************997....79*************99998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474593.01E-13576IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.8E-12679IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088812.544656IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.4E-6756IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.32E-6761No hitNo description
SMARTSM003537.8E-61262IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 283 aa     Download sequence    Send to blast
MDCSAARKTQ KADREKLRRD RLNEQFVELG NILDPDRPKN DKATIIGDTI QLLKDLTSQV  60
SKLKDEYATL NEESRELTQE KNDLREEKAS LKSDIGNLNN QYQQQLRTMF PWTAMDHSVM  120
MAPPSYPYPV PMAVPPGPIP MQPYPFFANQ HPAVISNPCS TYVPYLAPNT IVEQQSTQYV  180
SPPLHPCGRS NVSGKQESKS KSSRESKAEK NEDSNDVTTD LELKTPGSSA DQDLSSRQRK  240
SSKLSRRESS CTEGSSLGRC SSSRSVQDSS SSSVAASRKD NE*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Gma.371380.0cotyledon| meristem| somatic embryo
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed constitutively in roots, leaves, stems, and flowers. {ECO:0000269|PubMed:12679534}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.08G148500.2.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0944370.0BT094437.1 Soybean clone JCVI-FLGm-24H6 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003531414.10.0transcription factor bHLH121
RefseqXP_014634451.10.0transcription factor bHLH121
RefseqXP_028243910.10.0transcription factor bHLH121
RefseqXP_028243911.10.0transcription factor bHLH121
SwissprotQ9LT236e-96BH121_ARATH; Transcription factor bHLH121
TrEMBLA0A445JEW70.0A0A445JEW7_GLYSO; Transcription factor bHLH121 isoform B
TrEMBLI1KTH20.0I1KTH2_SOYBN; Uncharacterized protein
STRINGXP_007133432.11e-174(Phaseolus vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G19860.18e-78bHLH family protein
Publications ? help Back to Top
  1. Ezer D, et al.
    The G-Box Transcriptional Regulatory Code in Arabidopsis.
    Plant Physiol., 2017. 175(2): p. 628-640
    [PMID:28864470]
  2. Min JH, et al.
    Arabidopsis Basic Helix-Loop-Helix 34 (bHLH34) Is Involved in Glucose Signaling through Binding to a GAGA Cis-Element.
    Front Plant Sci, 2017. 8: p. 2100
    [PMID:29321786]