PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.08G156000.1.p
Common NameGLYMA_08G156000, LOC100777351
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family bHLH
Protein Properties Length: 272aa    MW: 30141.9 Da    PI: 6.1203
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.08G156000.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH26.41.2e-08144184954
                          HHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
                  HLH   9 ErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                           r RR+ri +++  L++l+P       +K++ a++L +A++Y+k L
  Glyma.08G156000.1.p 144 ARHRRERISEKIRILQRLVPGG-----TKMDTASMLDEAIRYVKFL 184
                          699*****************87.....8****************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088814.951135184IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.105.8E-12141192IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474593.01E-14141201IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.3E-12141190IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000837.80E-11141189No hitNo description
PfamPF000105.2E-6145184IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010197Biological Processpolar nucleus fusion
GO:0010500Biological Processtransmitting tissue development
GO:0048462Biological Processcarpel formation
GO:0005634Cellular Componentnucleus
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 272 aa     Download sequence    Send to blast
MDTNTSTLFT NVNSTWNLEK METNEQQQQH DDHSIILQVQ DPMGSGIWPI NNYQNLLQMH  60
QTPNTTTSST VIVPPSSSSG FLGDILGVHH NLEEDEEPEE ELGAMKEMMY KIAAMQPVDI  120
DPATIRKPKR RNVRISDDPQ SVAARHRRER ISEKIRILQR LVPGGTKMDT ASMLDEAIRY  180
VKFLKRQIRL LQSIPQPSRQ PPQCIGVAST TPHASTLLLA PSSDWPFAPN VLPRSTAVSA  240
SMDMSAGLGF DGHAHACDGS SSFNHHEVIS E*
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.08G156000.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKC1923741e-167KC192374.1 Phaseolus vulgaris cultivar BAT93 indehiscent-like protein gene, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003532880.10.0transcription factor HEC3
TrEMBLK7L6Z70.0K7L6Z7_SOYBN; Uncharacterized protein
STRINGGLYMA08G16570.20.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF65134141
Representative plantOGRP7611568
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G00120.12e-47bHLH family protein