PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.08G184500.1.p
Common NameGLYMA_08G184500
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family GATA
Protein Properties Length: 179aa    MW: 19860.5 Da    PI: 9.1449
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.08G184500.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA29.31.2e-09127935
                 GATA  9 TplWRrgpdgnktLCnaCGlyyrkkgl 35
                         TplW +gp  ++ LCnaCG +y+ +g+
  Glyma.08G184500.1.p  1 TPLWPNGPADKPVLCNACGSRYKTRGH 27
                         9*******77777**********9997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd002021.14E-8127No hitNo description
SuperFamilySSF577164.7E-5139No hitNo description
PfamPF003202.2E-7127IPR000679Zinc finger, GATA-type
Gene3DG3DSA:3.30.50.105.8E-7127IPR013088Zinc finger, NHR/GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0030154Biological Processcell differentiation
GO:0045944Biological Processpositive regulation of transcription from RNA polymerase II promoter
GO:0005634Cellular Componentnucleus
GO:0005667Cellular Componenttranscription factor complex
GO:0000977Molecular FunctionRNA polymerase II regulatory region sequence-specific DNA binding
GO:0001085Molecular FunctionRNA polymerase II transcription factor binding
GO:0001228Molecular Functiontranscriptional activator activity, RNA polymerase II transcription regulatory region sequence-specific binding
GO:0003682Molecular Functionchromatin binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 179 aa     Download sequence    Send to blast
TPLWPNGPAD KPVLCNACGS RYKTRGHLDN YLPKNVHPQP HHKKFKNVNS GGSNLNVEPE  60
LESGNQLLNH VSPRSTTNGD SDKLTLDVHH ISPQDFGKKI PSKKRSPMVY KRMIPMEKFQ  120
KQLVKLYKSE RQPEESVLVD NMMNFIPENE IGLGTILLKT NDDDASSTDK CGSSTSAP*
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.08G184500.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2354537e-49AC235453.1 Glycine max strain Williams 82 clone GM_WBb0167A12, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028246641.11e-130GATA transcription factor 26-like
TrEMBLA0A445JGG91e-129A0A445JGG9_GLYSO; GATA transcription factor 26 (Fragment)
TrEMBLK7L7H01e-129K7L7H0_SOYBN; Uncharacterized protein
STRINGGLYMA08G19681.11e-130(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF127471024
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G17570.13e-14GATA transcription factor 26