PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.08G189000.1.p
Common NameGLYMA_08G189000, LOC102668663
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family ZF-HD
Protein Properties Length: 147aa    MW: 17172.8 Da    PI: 9.865
Description ZF-HD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.08G189000.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1ZF-HD_dimer62.77.7e-201563357
          ZF-HD_dimer  3 kvrYkeClkNhAaslGghavDGCgEfmpsegeegtaaalkCaACgCHRnFHRrev 57
                          v+YkeC +NhAa+ G   +DGC E++ +      ++ l Ca CgCHRnFHR+++
  Glyma.08G189000.1.p 15 VVTYKECWHNHAAARGRVIYDGCLEYLVD------QDNLICACCGCHRNFHRKHT 63
                         689************************98......578***************86 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF047701.1E-161663IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
TIGRFAMsTIGR015662.8E-151762IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PROSITE profilePS5152315.681862IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
ProDomPD1257748.0E-91861IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
SuperFamilySSF466891.2E-1375142IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.1E-1877144IPR009057Homeodomain-like
PROSITE profilePS500719.73481145IPR001356Homeobox domain
TIGRFAMsTIGR015651.2E-1783139IPR006455Homeodomain, ZF-HD class
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 147 aa     Download sequence    Send to blast
MSDINPNQPL PMDEVVTYKE CWHNHAAARG RVIYDGCLEY LVDQDNLICA CCGCHRNFHR  60
KHTIFNGIPE TQTLDRVQGM RPKRKKRTTF SSEQRNKLIC FAESVGWKPR KDKKNEIQSF  120
CSEMGMTRRM FLIWLSNNRH RAIKKA*
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.08G189000.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006586401.11e-109zinc-finger homeodomain protein 6
TrEMBLK7L7J31e-107K7L7J3_SOYBN; Uncharacterized protein
STRINGGLYMA08G20170.21e-108(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF15282511
Representative plantOGRP9116237
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G18350.11e-24homeobox protein 24