PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.08G189900.2.p
Common NameGLYMA_08G189900
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family MYB_related
Protein Properties Length: 253aa    MW: 27352.8 Da    PI: 8.397
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.08G189900.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding42.31.7e-13556147
                         TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT.....TTS-HHHHHHHHHHH CS
      Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmg.....kgRtlkqcksrwqky 47
                         +++WT++E++ l+ +v+++G+g Wk I +  +     + R+  ++k++w+++
  Glyma.08G189900.2.p  5 KQKWTQDEEDALIAGVEKHGPGKWKNILKDPQfapflTSRSNIDLKDKWRNL 56
                         79************************************************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129414.532162IPR017930Myb domain
SuperFamilySSF466894.07E-16258IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.603.8E-15456IPR009057Homeodomain-like
SMARTSM007171.1E-8459IPR001005SANT/Myb domain
PfamPF002494.0E-10556IPR001005SANT/Myb domain
CDDcd116601.13E-21656No hitNo description
Gene3DG3DSA:1.10.10.107.8E-7113154IPR011991Winged helix-turn-helix DNA-binding domain
SuperFamilySSF467851.96E-6114151IPR011991Winged helix-turn-helix DNA-binding domain
PROSITE profilePS5150412.268115214IPR005818Linker histone H1/H5, domain H15
PfamPF005381.2E-5117154IPR005818Linker histone H1/H5, domain H15
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006334Biological Processnucleosome assembly
GO:0000786Cellular Componentnucleosome
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 253 aa     Download sequence    Send to blast
MGNQKQKWTQ DEEDALIAGV EKHGPGKWKN ILKDPQFAPF LTSRSNIDLK DKWRNLSVSN  60
GAQGSKEKSR VPKLKALPAP PAPTATPQNA APALQNAASD VTPPDASQND QDAKNPPRYN  120
AMIFEALSAL KDSNGSDMNA IIKFMEVQNG YKVKKEASSG TKSPSPKPKD VRPPQPQQQS  180
PASVLMTNDT IKEAADTAAY RVADAESKSY LAAEAVKEAE KISLLVEHSD SMLQLAKDIY  240
EQCSRGEIIL LA*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Gma.95220.0cotyledon| flower| hypocotyl| meristem| pod| root| stem
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00231DAPTransfer from AT1G72740Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.08G189900.2.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0993710.0BT099371.1 Soybean clone JCVI-FLGm-23H24 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006584644.10.0MYB transcription factor MYB107 isoform X1
RefseqXP_028244363.10.0telomere repeat-binding factor 4-like isoform X2
TrEMBLA0A445JGS70.0A0A445JGS7_GLYSO; Telomere repeat-binding factor 5 isoform B
TrEMBLI1KUQ80.0I1KUQ8_SOYBN; Uncharacterized protein
STRINGGLYMA08G20270.11e-156(Glycine max)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72740.22e-46MYB_related family protein