PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.08G195700.1.p
Common NameGLYMA_08G195700
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family C2H2
Protein Properties Length: 121aa    MW: 13578.5 Da    PI: 10.1695
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.08G195700.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H2140.000152648123
                         EEETTTTEEESSHHHHHHHHHHT CS
              zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                         ++C++C+k Fs+   L  H + H
  Glyma.08G195700.1.p 26 FSCKYCNKKFSSYQALGGHHNAH 48
                         89**********99999998877 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.160.606.2E-42352IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576675.62E-72353No hitNo description
PROSITE profilePS5015711.9052653IPR007087Zinc finger, C2H2
PfamPF139127.6E-82650IPR007087Zinc finger, C2H2
PROSITE patternPS0002802848IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 121 aa     Download sequence    Send to blast
MESNHGKVVV TAALSNKSVP LMKKEFSCKY CNKKFSSYQA LGGHHNAHKA EREAEKQNKI  60
LSNASAYYKK SFVGWFVYSN HNAYGYGFGG KTLGVSPLSM TRFKPFYYMS VTRDYQHVTA  120
*
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.08G195700.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2359040.0AC235904.2 Glycine max clone GM_WBc0179J02, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028246646.12e-84zinc finger protein KNUCKLES-like
TrEMBLA0A0R0IX207e-84A0A0R0IX20_SOYBN; Uncharacterized protein
STRINGXP_007135583.19e-27(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF1669724
Representative plantOGRP8215137
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G14010.19e-12C2H2 family protein