PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.08G195800.1.p
Common NameGLYMA_08G195800
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family C2H2
Protein Properties Length: 246aa    MW: 27011.5 Da    PI: 9.8142
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.08G195800.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H213.70.000183354223
                         EETTTTEEESSHHHHHHHHHHT CS
              zf-C2H2  2 kCpdCgksFsrksnLkrHirtH 23
                          C++C+k F++   L  H++ H
  Glyma.08G195800.1.p 33 ICKYCNKKFNNYQALGGHQNAH 54
                         6*****************9988 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576676.16E-63059No hitNo description
PROSITE profilePS5015711.0323259IPR007087Zinc finger, C2H2
PfamPF139122.4E-63354IPR007087Zinc finger, C2H2
PROSITE patternPS0002803454IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 246 aa     Download sequence    Send to blast
MMESNVEAKS NHGKVSASAS ASNKSPPMKK DLICKYCNKK FNNYQALGGH QNAHKNERAA  60
AQKQKILSMA SAYNKNSYAD GFVNSNQSYG FGGKILGVSP LSMTRFKPHY YSNWPHNHMS  120
HVAWPRHQIL NSVQPTIHQL QTLMMADQGS GFYRHHKSYQ QPLSFPILRE GAVLNSGSQS  180
ELLNPSLCYK GNNFGLASNS SIIPQNGIIE GSEDLNIKTS GEAKNSFSSM LANGDVMELD  240
LTLKI*
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.08G195800.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2359040.0AC235904.2 Glycine max clone GM_WBc0179J02, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014633908.10.0zinc finger protein 3
TrEMBLA0A0R0IV420.0A0A0R0IV42_SOYBN; Uncharacterized protein
STRINGXP_007135583.12e-71(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF1669724
Representative plantOGRP8215137
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G57520.12e-10zinc finger protein 2