PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.08G217100.1.p
Common NameGLYMA_08G217100
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family C2H2
Protein Properties Length: 226aa    MW: 25113 Da    PI: 8.7121
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.08G217100.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H213.80.000176587123
                         EEETTTTEEESSHHHHHHHHHHT CS
              zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                         ++C++C + F ++  L  H++ H
  Glyma.08G217100.1.p 65 FSCNYCQRKFYSSQALGGHQNAH 87
                         89******************988 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576671.19E-66292No hitNo description
PROSITE profilePS5015711.4276592IPR007087Zinc finger, C2H2
PROSITE patternPS0002806787IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 226 aa     Download sequence    Send to blast
MEDQKHQHDS VPRVLLDLSL SSNKDSGDDN SKLKPELNLL NCFHTNFSEN SSESSQGNEL  60
DPRVFSCNYC QRKFYSSQAL GGHQNAHKRE RTLARRGYKA GAADFGHTYS NIHFLPSHGL  120
YNKALGIQVH SMINKPSYQT PFFGLCRSNN GWQRQPLDSQ PAIGNFRVGA ETESSSLADS  180
VPKLGKFSTR LVAEGFGGYC FGSITTHLKS KQQEELQKLD LSLKL*
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.08G217100.1.p
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150420.0AP015042.1 Vigna angularis var. angularis DNA, chromosome 9, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006585613.11e-167zinc finger protein 1
TrEMBLA0A0R0IVR31e-167A0A0R0IVR3_SOYBN; Uncharacterized protein
STRINGGLYMA08G23210.11e-167(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF14393172
Representative plantOGRP8215137
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G10970.13e-36C2H2 family protein