PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.08G235200.1.p
Common NameGLYMA_08G235200, LOC102660641
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family LBD
Protein Properties Length: 199aa    MW: 22554.7 Da    PI: 4.435
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.08G235200.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF26077.13.1e-2410106198
               DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleql 90 
                          +C  C+ +rr+  ++C + +yf  + + +f+ + +lFG +n+++l+++++++er+++++s+++eA+++ rdP++Ga+g++++l +q+++ 
  Glyma.08G235200.1.p  10 SCPICRNQRRRHDDNCEFGQYFLGR-STDFESACRLFGFANLVRLMRSVEPSERQATADSILMEANIWDRDPINGAYGHVFNLVSQIQSF 98 
                          699******************9765.589************************************************************* PP

               DUF260  91 kaelallk 98 
                          ++el++++
  Glyma.08G235200.1.p  99 ESELETIN 106
                          ***99876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089118.569109IPR004883Lateral organ boundaries, LOB
PfamPF031951.7E-2410106IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 199 aa     Download sequence    Send to blast
MSQGNRNYFS CPICRNQRRR HDDNCEFGQY FLGRSTDFES ACRLFGFANL VRLMRSVEPS  60
ERQATADSIL MEANIWDRDP INGAYGHVFN LVSQIQSFES ELETINNWLA HIRDQQRQPS  120
SFSPNIPNQS IQDEGSNTPI PSLIGADIST RSSEKGESSI VAPKEDANIV VRERDSKVDD  180
NEEGTIPDKE QVDYFRDD*
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.08G235200.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006585733.11e-146LOB domain-containing protein 5
RefseqXP_028246683.11e-146LOB domain-containing protein 5-like
TrEMBLA0A0R0IRH11e-144A0A0R0IRH1_SOYBN; Uncharacterized protein
TrEMBLA0A445JJ361e-144A0A445JJ36_GLYSO; LOB domain-containing protein 28
STRINGGLYMA08G25501.11e-144(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF1630089
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G50510.12e-19LOB domain-containing protein 28