PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.08G250600.2.p
Common NameGLYMA_08G250600
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family MYB_related
Protein Properties Length: 197aa    MW: 23383 Da    PI: 7.5907
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.08G250600.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding28.92.7e-098312347
                         -HHHHHHHHTTTS-HHHHHHHHHHH CS
      Myb_DNA-binding 23 tWktIartmgkgRtlkqcksrwqky 47
                         +W+tIa+++  gRt++++k++w+++
  Glyma.08G250600.2.p  8 RWSTIAKYLS-GRTDNEIKNYWRTH 31
                         6*********.************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129413.297136IPR017930Myb domain
SuperFamilySSF466896.28E-7735IPR009057Homeodomain-like
PfamPF002499.2E-7731IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.8E-10831IPR009057Homeodomain-like
CDDcd001676.95E-6832No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 197 aa     Download sequence    Send to blast
MRITKTCRWS TIAKYLSGRT DNEIKNYWRT HFGKRERSKH KKKLQRPKVK RVLKQLKHKQ  60
QQEQQPQEYD IKSIMSHEET VNETKSFETQ NCKQQEMGFM YPTTEHQYTV PNSLHEGFSS  120
TWQDSTLVDD DSWFSLWDFD EPQGFSDYVD QFSKCAMPNQ ATFRVGGDYS MQNDVKTSRF  180
DDAYDNDLFY GKDMFG*
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.08G250600.2.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0991000.0BT099100.1 Soybean clone JCVI-FLGm-16H10 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001240937.11e-140uncharacterized protein LOC100785540
RefseqXP_028242568.11e-140transcription factor MYB57-like
TrEMBLI1KWI61e-146I1KWI6_SOYBN; Uncharacterized protein
STRINGGLYMA08G27660.11e-139(Glycine max)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G30210.12e-11myb domain protein 121