PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Glyma.08G261900.1.p

Common Name

GLYMA_08G261900, LOC100789066

Organism

Glycine max

Taxonomic ID

3847

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja

Family

LBD

Protein Properties

Length: 220aa MW: 23545.9 Da PI: 8.2917

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Glyma.08G261900.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	87.7	1.5e-27	4	108	1	100
DUF260 1 aCaaCkvlrrkCakdCvlapyf.....paeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqq 85 +C++C++lr++C +dC+++p++ p++q++++ +++k++G++ +++l++++p+++ +++++sl+yeA+ r+ +P G+vg+++++++ Glyma.08G261900.1.p 4 SCNGCRILRKGCGEDCAIRPCLewintPQAQANATLFLAKFYGRAGLVNLIDSAPQHNGPAVFKSLLYEACGRIANPTFGSVGLFWTGEW 93 6*************************************************************************************** PP DUF260 86 qleqlkaelallkee 100 +q++++++l++++ Glyma.08G261900.1.p 94 AQCQAAVDAVLAGSQ 108 ******9999887 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	15.614	3	109	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	2.0E-22	4	103	IPR004883	Lateral organ boundaries, LOB

Sequence ? help Back to Top
Protein Sequence Length: 220 aa Download sequence Send to blast
MKLSCNGCRI LRKGCGEDCA IRPCLEWINT PQAQANATLF LAKFYGRAGL VNLIDSAPQH 60 NGPAVFKSLL YEACGRIANP TFGSVGLFWT GEWAQCQAAV DAVLAGSQIK VVGASDSQGI 120 ATHGDEHVAQ ILGIRHVSKD AEMDHVKGRA KKIKRSRTVI KPKPQVSSID SAAMLKLTWS 180 REPGRSEGDS EETVEAMLVS QNKPSRNGGV EMDLDLTLG*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Glyma.08G261900.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	NP_001340934.1	1e-163	LBD domain-containing transcription factor
Refseq	XP_028223153.1	1e-163	LOB domain-containing protein 41-like
TrEMBL	A0A445EYC8	1e-162	A0A445EYC8_GLYSO; LOB domain-containing protein 41
TrEMBL	K7L8Z2	1e-162	K7L8Z2_SOYBN; Uncharacterized protein
STRING	GLYMA08G31143.1	1e-162	(Glycine max)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF14785	6	14
Representative plant	OGRP403	16	99

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G02550.1	6e-65	LOB domain-containing protein 41

Link Out ? help Back to Top
Phytozome	Glyma.08G261900.1.p
Entrez Gene	100789066