PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.08G279000.2.p
Common NameGLYMA_08G279000
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family AP2
Protein Properties Length: 442aa    MW: 48198.4 Da    PI: 7.9836
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.08G279000.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP245.91.4e-14163222155
                  AP2   1 sgykGVrwdkkrgrWvAeIrd.pse.ng..kr.krfslgkfgtaeeAakaaiaarkkleg 55 
                          s y+GV++++++gr++A+++d  +   g  ++ ++++lg ++ +++Aa+a++ a++k++g
  Glyma.08G279000.2.p 163 SIYRGVTRHRWTGRYEAHLWDnSCRrEGqaRKgRQVYLGGYDKEDKAARAYDLAALKYWG 222
                          57*******************666664478446**********99*************98 PP
2AP249.31.2e-15260310255
                  AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                           y+GV++++++grW A+I  +     +k  +lg+f t+eeAa+a++ a+ k++g
  Glyma.08G279000.2.p 260 AYRGVTRHHQQGRWQARIGRVAG---NKDLYLGTFSTEEEAAEAYDIAAIKFRG 310
                          69***************988532...5************************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541716.54E-17163230IPR016177DNA-binding domain
CDDcd000182.01E-21163232No hitNo description
PfamPF008471.7E-11163222IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.105.0E-16164231IPR001471AP2/ERF domain
SMARTSM003803.4E-28164236IPR001471AP2/ERF domain
PROSITE profilePS5103219.137164230IPR001471AP2/ERF domain
PRINTSPR003675.7E-7165176IPR001471AP2/ERF domain
SuperFamilySSF541717.19E-18259320IPR016177DNA-binding domain
CDDcd000184.61E-24259320No hitNo description
PROSITE profilePS5103219.296260318IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.105.9E-19260319IPR001471AP2/ERF domain
SMARTSM003802.5E-32260324IPR001471AP2/ERF domain
PfamPF008476.5E-10260310IPR001471AP2/ERF domain
PRINTSPR003675.7E-7300320IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 442 aa     Download sequence    Send to blast
MAGATNWLTF SLTHMEMQQF GPYDTTTHSH CFNDSNFYGW TNSKSVMDSQ SETQQLAVPK  60
MEDFYFGDHQ QDLKAMIVPG FKALSGTNSG SEVDDSTSNK TVTRVAPAAL GGAHSGESNC  120
KGSALTLCDV AANGSDDSNN KAVVAVGFDT RKKVAHTFGQ RTSIYRGVTR HRWTGRYEAH  180
LWDNSCRREG QARKGRQVYL GGYDKEDKAA RAYDLAALKY WGPTATTNFP ELEEMEHAGR  240
QEFIASLRRK SSGFSRGASA YRGVTRHHQQ GRWQARIGRV AGNKDLYLGT FSTEEEAAEA  300
YDIAAIKFRG SSAVTNFEMS RYDVDTILNN SLPVGGVAKR LKVSPATENK ALISTIIQPP  360
QNTNASSSIN FSAIQPVSSI PYDSAITCYP HNFFHHHFNP TNGGTSSSDS AAAAAVTDAI  420
ALNTLPPPAV PGFFIWPHQS Y*
Expression -- Description ? help Back to Top
Source Description
UniprotDEVELOPMENTAL STAGE: Confined to the central region of inflorescence ane floral meristems, progressively restricted to the innermost cells of the dome. Also detected in developing stamen locules and later in sporogonous cells within locules. In carpel primordia, found in placenta and in young ovule primordia. {ECO:0000269|PubMed:15988559}.
UniprotTISSUE SPECIFICITY: Expressed in roots, seedlings, inflorescence, and siliques. Also detected at low levels in leaves. {ECO:0000269|PubMed:15988559}.
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.08G279000.2.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2352041e-131AC235204.1 Glycine max strain Williams 82 clone GM_WBb0017J04, complete sequence.
GenBankAC2353911e-131AC235391.1 Glycine max strain Williams 82 clone GM_WBb0116P03, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006585923.10.0AP2-like ethylene-responsive transcription factor AIL6 isoform X1
SwissprotQ6J9N81e-121AIL7_ARATH; AP2-like ethylene-responsive transcription factor AIL7
TrEMBLA0A0R0ITN00.0A0A0R0ITN0_SOYBN; Uncharacterized protein
STRINGGLYMA08G38190.20.0(Glycine max)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G10510.21e-118AINTEGUMENTA-like 6
Publications ? help Back to Top
  1. Todd J,Post-Beittenmiller D,Jaworski JG
    KCS1 encodes a fatty acid elongase 3-ketoacyl-CoA synthase affecting wax biosynthesis in Arabidopsis thaliana.
    Plant J., 1999. 17(2): p. 119-30
    [PMID:10074711]
  2. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  3. Santuari L, et al.
    The PLETHORA Gene Regulatory Network Guides Growth and Cell Differentiation in Arabidopsis Roots.
    Plant Cell, 2016. 28(12): p. 2937-2951
    [PMID:27920338]
  4. Du Y,Scheres B
    PLETHORA transcription factors orchestrate de novo organ patterning during Arabidopsis lateral root outgrowth.
    Proc. Natl. Acad. Sci. U.S.A., 2017. 114(44): p. 11709-11714
    [PMID:29078398]