PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Glyma.08G280900.1.p

Common Name

GLYMA_08G280900

Organism

Glycine max

Taxonomic ID

3847

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja

Family

ZF-HD

Protein Properties

Length: 196aa MW: 21913.9 Da PI: 8.3193

Description

ZF-HD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Glyma.08G280900.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	ZF-HD_dimer	90.1	2.1e-28	1	53	6	59
ZF-HD_dimer 6 YkeClkNhAaslGghavDGCgEfmpsegeegtaaalkCaACgCHRnFHRrevee 59 Y+eClkNh +s+Ggha+DGC Ef+p geegt +alkCaAC+CHRn HR+e+++ Glyma.08G280900.1.p 1 YQECLKNHVVSIGGHAIDGCIEFLPG-GEEGTLDALKCAACNCHRNLHRKETHD 53 9**********************9.999******************9875 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF04770	1.4E-26	1	51	IPR006456	ZF-HD homeobox protein, Cys/His-rich dimerisation domain
TIGRFAMs	TIGR01566	2.8E-26	1	50	IPR006456	ZF-HD homeobox protein, Cys/His-rich dimerisation domain
ProDom	PD125774	1.0E-19	1	51	IPR006456	ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PROSITE profile	PS51523	25.222	1	50	IPR006456	ZF-HD homeobox protein, Cys/His-rich dimerisation domain
SuperFamily	SSF46689	9.13E-20	118	193	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	1.4E-31	122	194	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01565	2.0E-26	132	188	IPR006455	Homeodomain, ZF-HD class

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 196 aa Download sequence Send to blast
YQECLKNHVV SIGGHAIDGC IEFLPGGEEG TLDALKCAAC NCHRNLHRKE THDTYSVPFR 60 HHHHPLLPPP VPLAAYYRAL PGYLHMTGHQ CAMLAHPSLS GRGGPQPPWE DLEDSDPTSG 120 ATTHDGSGSS SKKRFRTKFT QHQKDKMLVF AEKLGWRMQK NDESIVQEFC SEIGVQRHLL 180 KVWMHNNKHT LGKKP*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1wh7_A	6e-24	131	190	16	75	ZF-HD homeobox family protein
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Putative transcription factor. {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Glyma.08G280900.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AC235407	0.0	AC235407.1 Glycine max strain Williams 82 clone GM_WBb0125K21, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_028246812.1	1e-127	zinc-finger homeodomain protein 2-like
Swissprot	Q6YXH5	8e-62	ZHD1_ORYSJ; Zinc-finger homeodomain protein 1
TrEMBL	A0A0R0IYY5	1e-145	A0A0R0IYY5_SOYBN; Uncharacterized protein (Fragment)
STRING	GLYMA08G38471.1	1e-143	(Glycine max)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF206	34	253
Representative plant	OGRP91	16	237

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G24660.1	7e-59	homeobox protein 22

Link Out ? help Back to Top
Phytozome	Glyma.08G280900.1.p

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764]