PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.08G281000.1.p
Common NameGLYMA_08G281000
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family ZF-HD
Protein Properties Length: 199aa    MW: 22128.1 Da    PI: 8.8141
Description ZF-HD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.08G281000.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1ZF-HD_dimer84.61.1e-26457559
          ZF-HD_dimer  5 rYkeClkNhAaslGghavDGCgEfmpsegeegtaaalkCaACgCHRnFHRrevee 59
                         +Y+eClkNh +s+G h +DGC Ef+p  geegt +alkC  C CHRnFHR+e+++
  Glyma.08G281000.1.p  4 KYQECLKNHGVSIGKHIIDGCIEFLPG-GEEGTLEALKCVVCSCHRNFHRKETHD 57
                         8*************************9.999********************9875 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
ProDomPD1257749.0E-18455IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
TIGRFAMsTIGR015661.8E-24454IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PfamPF047704.1E-26455IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PROSITE profilePS5152322.656554IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
SuperFamilySSF466891.92E-20121196IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.6E-32125197IPR009057Homeodomain-like
TIGRFAMsTIGR015655.8E-27135191IPR006455Homeodomain, ZF-HD class
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 199 aa     Download sequence    Send to blast
GKGKYQECLK NHGVSIGKHI IDGCIEFLPG GEEGTLEALK CVVCSCHRNF HRKETHDTYS  60
VPFHHHHPPL PPPVPFAAYY RAPPGYPHMT GHQRAMLAHP SLSGGGGPQP PLEDLEDSDP  120
TSGATTHDGS GSSSKKRFRT KFTQHQKDKM LVFAEKLGWR MQKNDDNVVQ EFCSEIGVQR  180
HVLKVWMHNN KHTLGKKP*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wh7_A3e-251341931675ZF-HD homeobox family protein
Search in ModeBase
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Mostly expressed in flowers and, to a lower extent, in inflorescence, stems and leaves. {ECO:0000269|PubMed:16428600}.
Functional Description ? help Back to Top
Source Description
UniProtEssential protein. Putative transcription factor.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.08G281000.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2354070.0AC235407.1 Glycine max strain Williams 82 clone GM_WBb0125K21, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028247283.11e-146zinc-finger homeodomain protein 2-like
SwissprotQ9SB611e-61ZHD2_ARATH; Zinc-finger homeodomain protein 2
TrEMBLA0A0R0J1U31e-146A0A0R0J1U3_SOYBN; Uncharacterized protein (Fragment)
TrEMBLA0A445JL611e-142A0A445JL61_GLYSO; Zinc-finger homeodomain protein 1
STRINGGLYMA08G38481.11e-145(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF20634253
Representative plantOGRP9116237
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G24660.11e-59homeobox protein 22
Publications ? help Back to Top
  1. Bueso E,Serrano R,Pallás V,Sánchez-Navarro JA
    Seed tolerance to deterioration in arabidopsis is affected by virus infection.
    Plant Physiol. Biochem., 2017. 116: p. 1-8
    [PMID:28477474]