PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Glyma.08G281200.1.p

Common Name

GLYMA_08G281200

Organism

Glycine max

Taxonomic ID

3847

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja

Family

ZF-HD

Protein Properties

Length: 262aa MW: 28932.9 Da PI: 7.3537

Description

ZF-HD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Glyma.08G281200.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	ZF-HD_dimer	84.9	9e-27	66	120	4	59
ZF-HD_dimer 4 vrYkeClkNhAaslGghavDGCgEfmpsegeegtaaalkCaACgCHRnFHRrevee 59 +Y+eClkNh +s+G h +DGC Ef+p g+egt +alkC C+CHRnFHR+e+++ Glyma.08G281200.1.p 66 GKYQECLKNHGVSIGKHIIDGCIEFLPG-GQEGTLEALKCVVCNCHRNFHRKETHD 120 58***********************9.999******************9875 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD125774	8.0E-18	56	118	IPR006456	ZF-HD homeobox protein, Cys/His-rich dimerisation domain
TIGRFAMs	TIGR01566	1.7E-24	67	117	IPR006456	ZF-HD homeobox protein, Cys/His-rich dimerisation domain
Pfam	PF04770	5.2E-26	67	118	IPR006456	ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PROSITE profile	PS51523	22.638	68	117	IPR006456	ZF-HD homeobox protein, Cys/His-rich dimerisation domain
SuperFamily	SSF46689	3.72E-20	184	259	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	2.9E-32	188	260	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01565	8.4E-27	198	254	IPR006455	Homeodomain, ZF-HD class

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 262 aa Download sequence Send to blast
MEFQKHHEEA ELGLPIAVAA TSYEEFGMPL NHGEQEPVVE VIPMAVPMAV PVAPPTNIVA 60 QNSGKGKYQE CLKNHGVSIG KHIIDGCIEF LPGGQEGTLE ALKCVVCNCH RNFHRKETHD 120 TYSVPFHHHH PPLPPPVPFA AYYRTPPGYP HMTGHQRAML AHPSLSGGGG PQPPLEDLED 180 SDPTSGATTH DGSGSSSKKR FRTKFTQHQK DKMLVFAEKL GWRMQKNDDS VVQEFCSEIG 240 VQRHVLKVWM HNNKHTLGKK P*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1wh7_A	7e-26	197	256	16	75	ZF-HD homeobox family protein
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Putative transcription factor. {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Glyma.08G281200.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AC235407	0.0	AC235407.1 Glycine max strain Williams 82 clone GM_WBb0125K21, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_014634789.1	0.0	zinc-finger homeodomain protein 2
Swissprot	Q6YXH5	9e-63	ZHD1_ORYSJ; Zinc-finger homeodomain protein 1
TrEMBL	I1KX97	0.0	I1KX97_SOYBN; Uncharacterized protein
STRING	GLYMA08G38500.1	0.0	(Glycine max)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF206	34	253
Representative plant	OGRP91	16	237

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G24660.1	7e-59	homeobox protein 22

Link Out ? help Back to Top
Phytozome	Glyma.08G281200.1.p

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764]