PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.08G284300.1.p
Common NameGLYMA_08G284300, LOC100803730
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family TALE
Protein Properties Length: 322aa    MW: 36284.9 Da    PI: 4.7495
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.08G284300.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox27.36.2e-09243298355
                          --SS--HHHHHHHHHHHH...HSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHH CS
             Homeobox   3 kRttftkeqleeLeelFe...knrypsaeereeLAkklgLterqVkvWFqNrRake 55 
                          kR ++ k+  ++L +  +   k +yp++ ++  LAk++gL+++q+ +WF N+R ++
  Glyma.08G284300.1.p 243 KRGKLPKDARQTLLQWWNihyKWPYPTEGDKIALAKSTGLDQKQINNWFINQRKRH 298
                          555555556666655555443679*****************************885 PP
2ELK27.19.9e-10218239122
                  ELK   1 ELKhqLlrKYsgyLgsLkqEFs 22 
                          ELK++LlrK+++++g Lk EFs
  Glyma.08G284300.1.p 218 ELKDRLLRKFGSHIGYLKLEFS 239
                          9********************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM012554.4E-2479123IPR005540KNOX1
PfamPF037902.3E-2381122IPR005540KNOX1
SMARTSM012567.0E-27130181IPR005541KNOX2
PfamPF037913.0E-25134180IPR005541KNOX2
PROSITE profilePS512139.411218238IPR005539ELK domain
SMARTSM011885.1E-5218239IPR005539ELK domain
PfamPF037892.4E-6218239IPR005539ELK domain
PROSITE profilePS5007112.94238301IPR001356Homeobox domain
SuperFamilySSF466897.27E-20239312IPR009057Homeodomain-like
SMARTSM003897.3E-14240305IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.602.4E-28243302IPR009057Homeodomain-like
CDDcd000861.12E-12250302No hitNo description
PfamPF059203.2E-17258297IPR008422Homeobox KN domain
PROSITE patternPS000270276299IPR017970Homeobox, conserved site
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010073Biological Processmeristem maintenance
GO:0005634Cellular Componentnucleus
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 322 aa     Download sequence    Send to blast
MEDEMYGVSS TTEYSDGALM TPENIFPAEY HSFLMSSAAR IPMFGSDELL SAVTAGNETE  60
PYPGATIAPE IQRQNDASSL IKAKIASHPH YPRLLQAYID CQKVGAPPEI ACLLEEIRRE  120
NDVCKRDVVV STCVEADPEL DEFMETYCDM LVKYKSDLTR PFDEATTFLN KIETQLTDLC  180
SGSSLLTLSD DGGVSSEEGF SAGDGDPQDG QLRSEDRELK DRLLRKFGSH IGYLKLEFSK  240
KKKRGKLPKD ARQTLLQWWN IHYKWPYPTE GDKIALAKST GLDQKQINNW FINQRKRHWK  300
PSENMPFSMV DGLTGRFLTD E*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1239246KKKKRGKL
Expression -- Description ? help Back to Top
Source Description
UniprotDEVELOPMENTAL STAGE: First detected in torpedo stage embryos at the boundaries between the presumptive SAM and the cotyledons. Later expressed between the cotyledons and the meristem, and between the cotyledons. In seedlings, localised in stipules and at the boundaries between the SAM and the emerging primordia. Expressed at the site of lateral roots. {ECO:0000269|PubMed:16798887}.
UniprotTISSUE SPECIFICITY: Expressed predominantly in shoot apices of seedlings, and, to a lower extent, in rosette leaves. {ECO:0000269|PubMed:11311158}.
Functional Description ? help Back to Top
Source Description
UniProtPlays a role in meristem function. Contributes to the shoot apical meristem (SAM) maintenance and organ separation by controlling boundary establishment in embryo in a CUC1, CUC2 and STM-dependent manner. Involved in maintaining cells in an undifferentiated, meristematic state. Probably binds to the DNA sequence 5'-TGAC-3'. {ECO:0000269|PubMed:16798887}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.08G284300.1.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Seems to be repressed by AS2 and AS1 but induced by STM, CUC1 and CUC2. {ECO:0000269|PubMed:11311158, ECO:0000269|PubMed:16798887}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003531995.20.0homeobox protein knotted-1-like 6
RefseqXP_014634796.10.0homeobox protein knotted-1-like 6
RefseqXP_028246972.10.0homeobox protein knotted-1-like 6
SwissprotQ84JS61e-148KNAT6_ARATH; Homeobox protein knotted-1-like 6
TrEMBLA0A445JLC40.0A0A445JLC4_GLYSO; Homeobox protein knotted-1-like 6 isoform A
TrEMBLI1KXC90.0I1KXC9_SOYBN; Uncharacterized protein
STRINGGLYMA08G39170.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF62034125
Representative plantOGRP16717148
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G23380.11e-139KNOTTED1-like homeobox gene 6
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Khan M, et al.
    Repression of Lateral Organ Boundary Genes by PENNYWISE and POUND-FOOLISH Is Essential for Meristem Maintenance and Flowering in Arabidopsis.
    Plant Physiol., 2015. 169(3): p. 2166-86
    [PMID:26417006]