PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.08G297200.3.p
Common NameGLYMA_08G297200
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family Whirly
Protein Properties Length: 187aa    MW: 20572.4 Da    PI: 10.0106
Description Whirly family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.08G297200.3.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Whirly109.33.1e-3493176184
               Whirly   1 svyktkaalkvkavrptfealdsgnlklkraGglllelanataerkydWekkqsfalsatevaelvdlaskesceffhdpaakg 84 
                          s+yk+kaal++ ++ p+f  ldsg+ k++++G +ll++a+a+++r+ydW++kq+f+ls+ e++++++l++++s e+fhdp++++
  Glyma.08G297200.3.p  93 SIYKGKAALTLTPRPPEFMPLDSGAYKISKEGYVLLQFAPAVGTRQYDWNRKQVFSLSVSEMGSVISLGARDSYELFHDPFKGK 176
                          7********************************************************************************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.30.31.108.2E-4182177IPR009044ssDNA-binding transcriptional regulator
SuperFamilySSF544472.98E-3686177IPR009044ssDNA-binding transcriptional regulator
PfamPF085366.8E-3694177IPR013742Plant transcription factor
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006281Biological ProcessDNA repair
GO:0032211Biological Processnegative regulation of telomere maintenance via telomerase
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0045910Biological Processnegative regulation of DNA recombination
GO:0009508Cellular Componentplastid chromosome
GO:0009570Cellular Componentchloroplast stroma
GO:0003697Molecular Functionsingle-stranded DNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0003723Molecular FunctionRNA binding
GO:0042162Molecular Functiontelomeric DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 187 aa     Download sequence    Send to blast
MSNLQLQLHS PPPSSLLSSS SSPSSLYSSS SLKLFPNHPF STKSLPFNNH KHFSLRCRHT  60
DLFDQNTIAS TPRPTRPSAS VGALPPRVYV GYSIYKGKAA LTLTPRPPEF MPLDSGAYKI  120
SKEGYVLLQF APAVGTRQYD WNRKQVFSLS VSEMGSVISL GARDSYELFH DPFKGKRCSK  180
QPCECG*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1l3a_A2e-468217632126p24: plant transcriptional regulator PBF-2
1l3a_B2e-468217632126p24: plant transcriptional regulator PBF-2
1l3a_C2e-468217632126p24: plant transcriptional regulator PBF-2
1l3a_D2e-468217632126p24: plant transcriptional regulator PBF-2
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Gma.329650.0cotyledon| flower| hypocotyl| leaf| somatic embryo| stem
Functional Description ? help Back to Top
Source Description
UniProtSingle-stranded DNA-binding protein that acts as a transcriptional activator of the pathogenesis-related gene PR-10a. Upon elicitation, binds a 30bp promoter sequence known as elicitor element response (ERE) and is required for PR-10a expression. {ECO:0000269|PubMed:10948264, ECO:0000269|PubMed:12080340, ECO:0000269|PubMed:14960277}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.08G297200.3.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2352351e-132AC235235.1 Glycine max strain Williams 82 clone GM_WBb0028H01, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014634831.11e-124single-stranded DNA-binding protein WHY1, chloroplastic isoform X1
RefseqXP_028245746.11e-124single-stranded DNA-binding protein WHY1, chloroplastic-like isoform X1
SwissprotQ9LL854e-53WHY1_SOLTU; Single-stranded DNA-binding protein WHY1, chloroplastic
TrEMBLI1KXQ91e-133I1KXQ9_SOYBN; Uncharacterized protein
STRINGGLYMA08G40850.11e-124(Glycine max)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G14410.14e-50ssDNA-binding transcriptional regulator