PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.08G325800.4.p
Common NameGLYMA_08G325800, LOC100127383
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family WRKY
Protein Properties Length: 491aa    MW: 53517.9 Da    PI: 6.5095
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.08G325800.4.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY101.35.5e-32136193260
                          --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS-- CS
                 WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhek 60 
                          dDgynWrKYGqK+vkgsefprsYY+Ct+++C+vkk  ers+ d++++ei+Y+g+H+h+k
  Glyma.08G325800.4.p 136 DDGYNWRKYGQKHVKGSEFPRSYYKCTHPNCEVKKLFERSH-DGQITEIIYKGTHDHPK 193
                          8****************************************.***************85 PP
2WRKY1061.9e-33310368159
                          ---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
                 WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                          ldDgy+WrKYGqK+v+g+++prsYY+Ct +gCpv+k+ver+++dpk+v++tYeg+Hnh+
  Glyma.08G325800.4.p 310 LDDGYRWRKYGQKVVRGNPNPRSYYKCTNTGCPVRKHVERASHDPKAVITTYEGKHNHD 368
                          59********************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.809.1E-28129194IPR003657WRKY domain
PROSITE profilePS5081123.835130194IPR003657WRKY domain
SuperFamilySSF1182902.88E-25132194IPR003657WRKY domain
SMARTSM007744.1E-34135193IPR003657WRKY domain
PfamPF031061.4E-24136192IPR003657WRKY domain
Gene3DG3DSA:2.20.25.801.2E-37295370IPR003657WRKY domain
SuperFamilySSF1182901.83E-29302370IPR003657WRKY domain
PROSITE profilePS5081138.664305370IPR003657WRKY domain
SMARTSM007743.5E-39310369IPR003657WRKY domain
PfamPF031063.5E-26311368IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 491 aa     Download sequence    Send to blast
MTSAASATFP VTTVCFNSNT VDERKPSFFE FKPHSGSNMV PADFDNHASE KSTQIDSQGK  60
AQAFDSSALV KNESASPSNE LSLSSPVQMD CSGASARVEG DLDELNPRSN ITTGLQASQV  120
DNRGSGLTVA AERVSDDGYN WRKYGQKHVK GSEFPRSYYK CTHPNCEVKK LFERSHDGQI  180
TEIIYKGTHD HPKPQPNRRY SAGTIMSVQE DRSDKASLTS RDDKGSNMCG QGSHLAEPDG  240
KPELLPVATN DGDLDGLGVL SNRNNDEVDD DDPFSKRRKM DVGIADITPV VKPIREPRVV  300
VQTLSEVDIL DDGYRWRKYG QKVVRGNPNP RSYYKCTNTG CPVRKHVERA SHDPKAVITT  360
YEGKHNHDVP TARNSCHDMA GPASASGQTR VRPEESDTIS LDLGMGISPA AENTSNSQGR  420
MMLSEFGDSQ IHTSNSNFKF VHTTTAPGYF GVLNNNSNPY GSKENPSDGP SLNHSAYPCP  480
QNIGRILMGP *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A6e-37125370677Probable WRKY transcription factor 4
2lex_A6e-37125370677Probable WRKY transcription factor 4
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Gma.316800.0flower| hypocotyl| leaf| pod| root| seed coat| stem
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element. {ECO:0000250|UniProtKB:Q9SI37}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.08G325800.4.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU0195740.0EU019574.1 Glycine max WRKY35 (WRKY35) mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003530784.10.0probable WRKY transcription factor 20 isoform X1
RefseqXP_028246070.10.0probable WRKY transcription factor 20 isoform X1
SwissprotQ93WV01e-162WRK20_ARATH; Probable WRKY transcription factor 20
TrEMBLA0A445JNA30.0A0A445JNA3_GLYSO; Putative WRKY transcription factor 20 isoform A
TrEMBLI1KYG70.0I1KYG7_SOYBN; Uncharacterized protein
STRINGGLYMA08G43770.10.0(Glycine max)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G26640.11e-160WRKY family protein