PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.08G333600.1.p
Common NameGLYMA_08G333600
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family MYB_related
Protein Properties Length: 392aa    MW: 45161.3 Da    PI: 6.4298
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.08G333600.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding25.72.6e-08114157447
                          S-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
      Myb_DNA-binding   4 WTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                          WT eE++ ++ + + +  + Wk I+++    +tlkq+ s+ qky
  Glyma.08G333600.1.p 114 WTIEEHKSFLFGLEIMKEKGWKQISEKYVPSKTLKQVASHAQKY 157
                          *************************99998*************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS512949.888106162IPR017930Myb domain
Gene3DG3DSA:1.10.10.601.2E-5107161IPR009057Homeodomain-like
SuperFamilySSF466899.79E-13108161IPR009057Homeodomain-like
TIGRFAMsTIGR015571.4E-11109161IPR006447Myb domain, plants
PfamPF002491.7E-5113157IPR001005SANT/Myb domain
CDDcd001676.28E-4114158No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 392 aa     Download sequence    Send to blast
MSDYYFDEEE MQELLKENDA PVSDDFFNDF AAQDSSPPAD EILPADEVLD PLLVPTSHMV  60
HTSSATAPDP APHLIPSEET LPSSHPHHLL RQNMESNHVM LSGDSSHHKK YEHWTIEEHK  120
SFLFGLEIMK EKGWKQISEK YVPSKTLKQV ASHAQKYFKR KNTPMKERKR RSIHDITLED  180
IHMTDTSHID KHNWVPLPTN FAVQPHTPHI DQPNWVPPTP NFIVQPHTPS IHQHNWVPPT  240
PNFIAQSHTP RIDQHTWVPP APPNFAGQPR SAHIDQLNWV SPPPNFAPHT PLVDQDNWVP  300
TPPDFAVQSH TPHIDQHNLV PPPPNFAVQP HQMQRAQHMQ QFNLHDSSPQ MDEYRNFNSF  360
HPQNELDLIA QQILEYKKNK FNHKNNEGSS R*
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.08G333600.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006601664.11e-126myb-like protein J
TrEMBLK7LAI60.0K7LAI6_SOYBN; Uncharacterized protein
STRINGGLYMA08G45255.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF3571822
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G08520.11e-17MYB family protein