PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Glyma.08G334200.1.p

Common Name

GLYMA_08G334200, LOC102659782

Organism

Glycine max

Taxonomic ID

3847

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja

Family

LBD

Protein Properties

Length: 194aa MW: 22035.8 Da PI: 6.9913

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Glyma.08G334200.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	123.6	9.9e-39	8	106	1	99
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleql 90 aCaaCk++rrkC ++C+lapyfp++++k+f n+h+lFG+ ++++++k l++++r+ ams+l+ye+++rardP+ G+++++l+lq+q+ + Glyma.08G334200.1.p 8 ACAACKYQRRKCGSNCILAPYFPHDRQKQFLNAHRLFGVGKITNMIKPLDQHHRDLAMSTLIYESDMRARDPIGGCYSLVLQLQSQIFYA 97 7***************************************************************************************99 PP DUF260 91 kaelallke 99 ++l+ll + Glyma.08G334200.1.p 98 TQQLHLLLQ 106 999998765 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	24.33	7	108	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	6.1E-36	8	103	IPR004883	Lateral organ boundaries, LOB

Sequence ? help Back to Top
Protein Sequence Length: 194 aa Download sequence Send to blast
MSRSSTQACA ACKYQRRKCG SNCILAPYFP HDRQKQFLNA HRLFGVGKIT NMIKPLDQHH 60 RDLAMSTLIY ESDMRARDPI GGCYSLVLQL QSQIFYATQQ LHLLLQHLAY FKSHQPSSNS 120 SDIVNNVTPQ PPDPLEQTPQ EQQQQQQCFN YNLLQEDDIN MWAIQNSLSL LSPLSLENNI 180 NQDPVVDHGS HSL*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5ly0_A	6e-24	9	94	12	97	LOB family transfactor Ramosa2.1
5ly0_B	6e-24	9	94	12	97	LOB family transfactor Ramosa2.1
Search in ModeBase

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Glyma.08G334200.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006586591.1	1e-142	LOB domain-containing protein 22
Swissprot	Q9LRW1	1e-43	LBD22_ARATH; LOB domain-containing protein 22
TrEMBL	K7LAI1	1e-141	K7LAI1_SOYBN; Uncharacterized protein
STRING	GLYMA08G45176.1	1e-141	(Glycine max)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF4133	32	59
Representative plant	OGRP5524	10	21

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G13850.1	4e-39	LOB domain-containing protein 22

Link Out ? help Back to Top
Phytozome	Glyma.08G334200.1.p
Entrez Gene	102659782

Publications ? help Back to Top
Kim M,Kim MJ,Pandey S,Kim J Expression and Protein Interaction Analyses Reveal Combinatorial Interactions of LBD Transcription Factors During Arabidopsis Pollen Development. Plant Cell Physiol., 2016. 57(11): p. 2291-2299 [PMID:27519310]