PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.08G339100.1.p
Common NameGLYMA_08G339100
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family B3
Protein Properties Length: 257aa    MW: 29316.4 Da    PI: 9.3449
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.08G339100.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B351.81.5e-1622112198
                          EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE CS
                   B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsef 90 
                          ff ++++++ l+ + l+lp kf++++g+    s  + l+ ++g +W+v+l  +k++g++++++GWk+F++   L  g  + F++dg+s f
  Glyma.08G339100.1.p  22 FFRIMLHENLLQGN-LRLPEKFVRKYGNH--LSNSMLLKLPNGIEWKVNL--EKRDGSVWFQEGWKDFAEYYSLANGHLLGFRYDGTSHF 106
                          66667666666665.***********966..7889999************..**********************************9999 PP

                          ..EEEEE- CS
                   B3  91 elvvkvfr 98 
                            +v +++
  Glyma.08G339100.1.p 107 --HVFICD 112
                          ..887776 PP
2B352.31.1e-16161255399
                          EE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS.SEE. CS
                   B3   3 kvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr.sefe 91 
                          +v ++s++ ++++++lpk+ ++++ ++ e+ ++l +     rsW+vk++y++++   ++t+ W  F+k+n+LkegD ++F+l ++ ++  
  Glyma.08G339100.1.p 161 TVIMKSSYVSKRIMYLPKSPLKRYTKSGEQYVKLLV---GDRSWRVKVTYCRNKTLSYFTGDWLVFAKENDLKEGDACLFQLLSNgDGIV 247
                          4455556666667***********766445544444...55*********99999999***********************998867777 PP

                          .EEEEE-S CS
                   B3  92 lvvkvfrk 99 
                          ++v++ r+
  Glyma.08G339100.1.p 248 MKVSISRR 255
                          77777765 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.102.8E-2417113IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.39E-2317113IPR015300DNA-binding pseudobarrel domain
CDDcd100175.20E-1921112No hitNo description
PROSITE profilePS5086312.8321114IPR003340B3 DNA binding domain
SMARTSM010191.7E-1622114IPR003340B3 DNA binding domain
PfamPF023625.0E-1423112IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.105.5E-19156254IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019369.81E-18157249IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086311.533159256IPR003340B3 DNA binding domain
PfamPF023621.0E-14160255IPR003340B3 DNA binding domain
CDDcd100172.57E-15160254No hitNo description
SMARTSM010194.0E-13160256IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 257 aa     Download sequence    Send to blast
MTSQLDDGDG SYGYSATKPI HFFRIMLHEN LLQGNLRLPE KFVRKYGNHL SNSMLLKLPN  60
GIEWKVNLEK RDGSVWFQEG WKDFAEYYSL ANGHLLGFRY DGTSHFHVFI CDMSTMEIEY  120
PVNKANHKRP SINSEESKGN MEGSSISNCG NHEAAGNTSF TVIMKSSYVS KRIMYLPKSP  180
LKRYTKSGEQ YVKLLVGDRS WRVKVTYCRN KTLSYFTGDW LVFAKENDLK EGDACLFQLL  240
SNGDGIVMKV SISRRV*
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.08G339100.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028246886.11e-178B3 domain-containing protein At4g01580-like
TrEMBLA0A0R0J2V00.0A0A0R0J2V0_SOYBN; Uncharacterized protein
STRINGGLYMA08G44655.11e-116(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF9834369
Representative plantOGRP1718538
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G49475.12e-25B3 family protein