PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Glyma.08G346300.1.p

Common Name

GLYMA_08G346300, Glyma08g46040.1, LOC100812081

Organism

Glycine max

Taxonomic ID

3847

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja

Family

bHLH

Protein Properties

Length: 587aa MW: 63804.8 Da PI: 6.5095

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Glyma.08G346300.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	28	4e-09	396	443	4	55
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +h+ +Er RR++i +++ L++l+P + +k Ka +L + ++Y++sLq Glyma.08G346300.1.p 396 SHSLAERVRREKISERMKLLQDLVPGC----NKVTGKALMLDEIINYVQSLQ 443 8***********************9....677***************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF47459	8.24E-17	390	461	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	1.48E-10	390	447	No hit	No description
Gene3D	G3DSA:4.10.280.10	1.4E-16	392	460	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profile	PS50888	15.663	392	442	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	3.3E-6	396	443	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	1.6E-10	398	448	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 587 aa Download sequence Send to blast
MENQFFLNAG VPPQLHFEPS PHHHHHHLCP PPSWQSSLSS AMDVQVTVLN CSTEQNPDCF 60 YNNTPTWDKS TDHHGLQFDS ALSSMVSSPA ASNSNMSSEN FVIRELIGKL GNIGAGSDEI 120 EISPHSQPLV GASSYINCNN NSTNTSCYST PLSSSPKVNM NKIPTMVKHL VKEGMPLSLG 180 TSTSLNSTVA EFSADPGFAE RAAKLSCFGS RSFNGRTTQL CLNIAELAQR SSPLVENGKK 240 QLPRVSSSPS LKVLGSQMGT QENKNSPLQD LMEVANSQEE SAISEQTPNG DTGEKPSPYV 300 NSRKRKGPSK GKAKETSTST NPPMAAEASD DSNAKRSKPN EGEGNENGQV KAEEESKGGN 360 NSNANDEKQN KSNSKPPEPP KDYIHVRARR GQATDSHSLA ERVRREKISE RMKLLQDLVP 420 GCNKVTGKAL MLDEIINYVQ SLQRQVEFLS MKLASVNTRL DFSIESLISK DIFQSNNSLA 480 QPIFPIDSSA PPFYGQQTQP NPAIHNNIPN GTMTHNSVDP LDTGMCQNLG MHLPHLNGFN 540 EGGFQYPITF SEDDLHTIVQ MGFGQTANRK TPIQSQSFNG SNQEPL*

Sequence ? help Back to Top

Protein Sequence Length: 587 aa Download sequence Send to blast

MENQFFLNAG VPPQLHFEPS PHHHHHHLCP PPSWQSSLSS AMDVQVTVLN CSTEQNPDCF  60
YNNTPTWDKS TDHHGLQFDS ALSSMVSSPA ASNSNMSSEN FVIRELIGKL GNIGAGSDEI  120
EISPHSQPLV GASSYINCNN NSTNTSCYST PLSSSPKVNM NKIPTMVKHL VKEGMPLSLG  180
TSTSLNSTVA EFSADPGFAE RAAKLSCFGS RSFNGRTTQL CLNIAELAQR SSPLVENGKK  240
QLPRVSSSPS LKVLGSQMGT QENKNSPLQD LMEVANSQEE SAISEQTPNG DTGEKPSPYV  300
NSRKRKGPSK GKAKETSTST NPPMAAEASD DSNAKRSKPN EGEGNENGQV KAEEESKGGN  360
NSNANDEKQN KSNSKPPEPP KDYIHVRARR GQATDSHSLA ERVRREKISE RMKLLQDLVP  420
GCNKVTGKAL MLDEIINYVQ SLQRQVEFLS MKLASVNTRL DFSIESLISK DIFQSNNSLA  480
QPIFPIDSSA PPFYGQQTQP NPAIHNNIPN GTMTHNSVDP LDTGMCQNLG MHLPHLNGFN  540
EGGFQYPITF SEDDLHTIVQ MGFGQTANRK TPIQSQSFNG SNQEPL*

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Gma.21587	0.0	epicotyl\| root\| stem

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00660	PBM	Transfer from Pp3c6_9520	Download

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Glyma.08G346300.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	KT031113	0.0	KT031113.1 Glycine max clone HN_CCL_101 bHLH transcription factor (Glyma08g46040.1) mRNA, partial cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_003532257.1	0.0	transcription factor bHLH62
Refseq	XP_028246340.1	0.0	transcription factor bHLH62-like
TrEMBL	A0A445JP18	0.0	A0A445JP18_GLYSO; Transcription factor bHLH62 isoform A
TrEMBL	I1KZ15	0.0	I1KZ15_SOYBN; BHLH transcription factor
STRING	GLYMA08G46040.1	0.0	(Glycine max)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF2530	34	80
Representative plant	OGRP58	16	313

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G07340.1	3e-93	bHLH family protein

Link Out ? help Back to Top
Phytozome	Glyma.08G346300.1.p
Entrez Gene	100812081

Publications ? help Back to Top
Chai C, et al. Soybean transcription factor ORFeome associated with drought resistance: a valuable resource to accelerate research on abiotic stress resistance. BMC Genomics, 2015. 16: p. 596 [PMID:26268547]