PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.08G356900.1.p
Common NameGLYMA_08G356900
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family bHLH
Protein Properties Length: 92aa    MW: 10619.9 Da    PI: 7.2625
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.08G356900.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH24.16.7e-0816571455
                         HHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS
                  HLH 14 driNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55
                         ++iN+  ++L+ llP+ + + ++ + s + iL++++ +I+ Lq
  Glyma.08G356900.1.p 16 NEINELVSRLQVLLPQvN-QRGNSRQSASKILQETCCHIRRLQ 57
                         58**************66.9999*******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS508889.026256IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.1E-81669IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474593.27E-81670IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000103.2E-51657IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 92 aa     Download sequence    Send to blast
MSGQRRSSRA SKFTENEINE LVSRLQVLLP QVNQRGNSRQ SASKILQETC CHIRRLQEEV  60
EQLSERLSEI LDSADISDID RRTLQNFLQQ Y*
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.08G356900.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027351279.15e-49transcription factor PRE4-like
TrEMBLA0A0B2PI033e-57A0A0B2PI03_GLYSO; Transcription factor ILI7
TrEMBLK7LAU23e-57K7LAU2_SOYBN; Uncharacterized protein
STRINGGLYMA08G47171.15e-58(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF106242439
Representative plantOGRP1320335
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G28857.11e-18bHLH family protein