PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.09G021600.1.p
Common NameGLYMA_09G021600, LOC100794219
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family LBD
Protein Properties Length: 171aa    MW: 18623.2 Da    PI: 9.0829
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.09G021600.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260145.81.3e-45141131100
               DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleql 90 
                          +CaaCk+lrr+Ca+dCv+apyfpa++p+kfanvhk+FGasnv k+l++lp ++r da+ss+vyeA+ar+rdPvyG+vg i++lqqq++ l
  Glyma.09G021600.1.p  14 PCAACKLLRRRCAQDCVFAPYFPADEPQKFANVHKVFGASNVNKMLQDLPMHQRGDAVSSMVYEANARVRDPVYGCVGAISSLQQQIDVL 103
                          7***************************************************************************************** PP

               DUF260  91 kaelallkee 100
                          +++la++++e
  Glyma.09G021600.1.p 104 QTQLARAQAE 113
                          *****99976 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089126.52113114IPR004883Lateral organ boundaries, LOB
PfamPF031953.9E-4514111IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 171 aa     Download sequence    Send to blast
MKEGGGRKQG AASPCAACKL LRRRCAQDCV FAPYFPADEP QKFANVHKVF GASNVNKMLQ  60
DLPMHQRGDA VSSMVYEANA RVRDPVYGCV GAISSLQQQI DVLQTQLARA QAEVAHLRVR  120
QNRCFSNHGL RPTSPTHSGF PSSKTLDSHA KPIFDIDMVD QASYGGSMWS *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5ly0_A3e-50101147111LOB family transfactor Ramosa2.1
5ly0_B3e-50101147111LOB family transfactor Ramosa2.1
Search in ModeBase
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in young shoots, roots, stems, leaves and flowers. {ECO:0000269|PubMed:12068116}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.09G021600.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150382e-79AP015038.1 Vigna angularis var. angularis DNA, chromosome 5, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003535054.11e-126LOB domain-containing protein 4
RefseqXP_028180280.11e-126LOB domain-containing protein 4-like
SwissprotQ9SHE92e-77LBD4_ARATH; LOB domain-containing protein 4
TrEMBLA0A0B2QS871e-124A0A0B2QS87_GLYSO; LOB domain-containing protein 4
TrEMBLI1L0C81e-124I1L0C8_SOYBN; Uncharacterized protein
STRINGGLYMA09G02510.11e-125(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF133434105
Representative plantOGRP6016318
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G31320.19e-80LOB domain-containing protein 4