PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Glyma.09G023800.1.p

Common Name

GLYMA_09G023800, LOC100784325

Organism

Glycine max

Taxonomic ID

3847

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja

Family

NF-YA

Protein Properties

Length: 220aa MW: 24484 Da PI: 6.0834

Description

NF-YA family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Glyma.09G023800.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	CBFB_NFYA	100.3	1.9e-31	124	180	1	58
CBFB_NFYA 1 deplYVNaKQyqrIlkRRqkRakleeekkldeksrkpylheSRhkhAlrRpRgsgGrF 58 +ep++VNaKQy++Il+RRq+Rak+e+ekk +++rkpylheSRh hAlrR+Rg+gGrF Glyma.09G023800.1.p 124 EEPVFVNAKQYHGILRRRQSRAKAESEKKA-ARNRKPYLHESRHLHALRRARGCGGRF 180 69*************************9.************************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00521	7.0E-35	122	183	IPR001289	Nuclear transcription factor Y subunit A
PROSITE profile	PS51152	36.416	123	183	IPR001289	Nuclear transcription factor Y subunit A
Pfam	PF02045	7.0E-27	125	180	IPR001289	Nuclear transcription factor Y subunit A
PRINTS	PR00616	2.1E-23	126	148	IPR001289	Nuclear transcription factor Y subunit A
PROSITE pattern	PS00686	0	128	148	IPR018362	CCAAT-binding factor, conserved site
PRINTS	PR00616	2.1E-23	157	180	IPR001289	Nuclear transcription factor Y subunit A

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0016602	Cellular Component	CCAAT-binding factor complex
GO:0003677	Molecular Function	DNA binding
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 220 aa Download sequence Send to blast
MCVDWDTVLH VNQEIMTSTH DLSDNEADDQ QQSESQMEPL SANGISYAGI ATQNVQYATP 60 SQLGTGHAVV PPTYPYPDPY YRSIFAPYDA QTYPPQPYGG NPMVHLQLMG IQQAGVPLPT 120 DTVEEPVFVN AKQYHGILRR RQSRAKAESE KKAARNRKPY LHESRHLHAL RRARGCGGRF 180 LNSKKDENQQ DEVASTDESQ STINLNSDKN ELAPSDRTS*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
4awl_A	4e-20	123	188	1	66	NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT ALPHA
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Stimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters. {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Glyma.09G023800.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_003535083.1	1e-165	nuclear transcription factor Y subunit A-8 isoform X1
Refseq	XP_028180342.1	1e-165	nuclear transcription factor Y subunit A-7-like isoform X1
Swissprot	Q84JP1	1e-69	NFYA7_ARATH; Nuclear transcription factor Y subunit A-7
TrEMBL	A0A445IVV6	1e-163	A0A445IVV6_GLYSO; Nuclear transcription factor Y subunit A-7 isoform B (Fragment)
TrEMBL	K7LBF6	1e-163	K7LBF6_SOYBN; Uncharacterized protein
STRING	GLYMA09G02770.2	1e-164	(Glycine max)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF5379	33	55
Representative plant	OGRP680	16	72

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G30500.2	7e-54	nuclear factor Y, subunit A7

Link Out ? help Back to Top
Phytozome	Glyma.09G023800.1.p
Entrez Gene	100784325

Publications ? help Back to Top
Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Zhao H, et al. The Arabidopsis thaliana Nuclear Factor Y Transcription Factors. Front Plant Sci, 2016. 7: p. 2045 [PMID:28119722]