PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Glyma.09G023800.3.p

Common Name

GLYMA_09G023800, LOC100784325

Organism

Glycine max

Taxonomic ID

3847

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja

Family

NF-YA

Protein Properties

Length: 180aa MW: 20555.2 Da PI: 9.7771

Description

NF-YA family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Glyma.09G023800.3.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	CBFB_NFYA	100.9	1.3e-31	84	140	1	58
CBFB_NFYA 1 deplYVNaKQyqrIlkRRqkRakleeekkldeksrkpylheSRhkhAlrRpRgsgGrF 58 +ep++VNaKQy++Il+RRq+Rak+e+ekk +++rkpylheSRh hAlrR+Rg+gGrF Glyma.09G023800.3.p 84 EEPVFVNAKQYHGILRRRQSRAKAESEKKA-ARNRKPYLHESRHLHALRRARGCGGRF 140 69*************************9.************************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00521	7.0E-35	82	143	IPR001289	Nuclear transcription factor Y subunit A
PROSITE profile	PS51152	36.416	83	143	IPR001289	Nuclear transcription factor Y subunit A
Pfam	PF02045	4.8E-27	85	140	IPR001289	Nuclear transcription factor Y subunit A
PRINTS	PR00616	1.6E-23	86	108	IPR001289	Nuclear transcription factor Y subunit A
PROSITE pattern	PS00686	0	88	108	IPR018362	CCAAT-binding factor, conserved site
PRINTS	PR00616	1.6E-23	117	140	IPR001289	Nuclear transcription factor Y subunit A

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0016602	Cellular Component	CCAAT-binding factor complex
GO:0003677	Molecular Function	DNA binding
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 180 aa Download sequence Send to blast
MTSQIMKLMT SSSRNHKWSL YLQMEFLMQV PPTYPYPDPY YRSIFAPYDA QTYPPQPYGG 60 NPMVHLQLMG IQQAGVPLPT DTVEEPVFVN AKQYHGILRR RQSRAKAESE KKAARNRKPY 120 LHESRHLHAL RRARGCGGRF LNSKKDENQQ DEVASTDESQ STINLNSDKN ELAPSDRTS*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
4awl_A	3e-20	83	148	1	66	NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT ALPHA
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Stimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters. {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Glyma.09G023800.3.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	BT146024	1e-141	BT146024.1 Medicago truncatula clone JCVI-FLMt-11O7 unknown mRNA.
GenBank	JQ918271	1e-141	JQ918271.1 Medicago truncatula nuclear transcription factor Y subunit A6 (NF-YA6) mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006586834.1	1e-133	nuclear transcription factor Y subunit A-8 isoform X3
Refseq	XP_006586835.1	1e-133	nuclear transcription factor Y subunit A-8 isoform X3
Refseq	XP_028180345.1	1e-133	nuclear transcription factor Y subunit A-7-like isoform X4
Refseq	XP_028180346.1	1e-133	nuclear transcription factor Y subunit A-7-like isoform X4
Swissprot	Q84JP1	1e-62	NFYA7_ARATH; Nuclear transcription factor Y subunit A-7
TrEMBL	A0A0R0I6T1	1e-132	A0A0R0I6T1_SOYBN; Uncharacterized protein
STRING	GLYMA09G02770.2	1e-109	(Glycine max)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G30500.2	8e-49	nuclear factor Y, subunit A7

Link Out ? help Back to Top
Phytozome	Glyma.09G023800.3.p
Entrez Gene	100784325

Publications ? help Back to Top
Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Zhao H, et al. The Arabidopsis thaliana Nuclear Factor Y Transcription Factors. Front Plant Sci, 2016. 7: p. 2045 [PMID:28119722]