PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Glyma.09G029300.3.p

Common Name

GLYMA_09G029300

Organism

Glycine max

Taxonomic ID

3847

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja

Family

MYB_related

Protein Properties

Length: 272aa MW: 29965.1 Da PI: 9.8887

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Glyma.09G029300.3.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	37.5	5.6e-12	5	56	1	47
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT.....TTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmg.....kgRtlkqcksrwqky 47 +++WT+eE++ l+ +v ++G g W+tI + R+ ++k++w+++ Glyma.09G029300.3.p 5 KQKWTAEEEQALKAGVVKHGVGKWRTILKDPEfssvlYLRSNVDLKDKWRNL 56 79*********************************88*********96 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	11.192	1	58	IPR017930	Myb domain
SuperFamily	SSF46689	1.42E-16	2	71	IPR009057	Homeodomain-like
SMART	SM00717	1.8E-7	4	59	IPR001005	SANT/Myb domain
Pfam	PF00249	1.6E-8	5	56	IPR001005	SANT/Myb domain
Gene3D	G3DSA:1.10.10.60	1.5E-13	5	56	IPR009057	Homeodomain-like
CDD	cd11660	2.36E-19	6	56	No hit	No description
SuperFamily	SSF46785	1.09E-5	118	156	IPR011991	Winged helix-turn-helix DNA-binding domain
Gene3D	G3DSA:1.10.10.10	1.4E-5	119	156	IPR011991	Winged helix-turn-helix DNA-binding domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006334	Biological Process	nucleosome assembly
GO:0000786	Cellular Component	nucleosome
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 272 aa Download sequence Send to blast
MGAPKQKWTA EEEQALKAGV VKHGVGKWRT ILKDPEFSSV LYLRSNVDLK DKWRNLSVMA 60 NGWSSREKSR LSVRRVHQVP RQDENSMAIT AVAPSDEEIV DVKPLQVSRD MVHIPGPKRS 120 NLSLDKLIME AITCLKENGG SNKTAIAAFI EVNRKYRIAP IAAYSDRRRN SSVLYLEGRQ 180 KASMKIDRDE TNILTRSQID LELEKIRSMT PQEAAAFAAR AVAEAEAAIA EAEEAAKEAE 240 AAEADAEAAQ AFADATTKSA KGRKSPKRIH A*

Functional Description ? help Back to Top
Source	Description
UniProt	Binds preferentially double-stranded telomeric repeats. {ECO:0000269\|PubMed:19102728}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Glyma.09G029300.3.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	BT098318	0.0	BT098318.1 Soybean clone JCVI-FLGm-23G7 unknown mRNA.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	NP_001341121.1	0.0	MYB transcription factor isoform 2
Swissprot	Q8VWK4	2e-77	TRB1_ARATH; Telomere repeat-binding factor 1
TrEMBL	A0A0R0I701	0.0	A0A0R0I701_SOYBN; Uncharacterized protein
TrEMBL	I1L0K2	0.0	I1L0K2_SOYBN; Uncharacterized protein
STRING	GLYMA09G03390.1	1e-153	(Glycine max)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G49950.3	2e-78	telomere repeat binding factor 1

Link Out ? help Back to Top
Phytozome	Glyma.09G029300.3.p

Publications ? help Back to Top
Alexandrov NN, et al. Features of Arabidopsis genes and genome discovered using full-length cDNAs. Plant Mol. Biol., 2006. 60(1): p. 69-85 [PMID:16463100] Schrumpfová PP, et al. Telomere repeat binding proteins are functional components of Arabidopsis telomeres and interact with telomerase. Plant J., 2014. 77(5): p. 770-81 [PMID:24397874] Liang SC, et al. Kicking against the PRCs - A Domesticated Transposase Antagonises Silencing Mediated by Polycomb Group Proteins and Is an Accessory Component of Polycomb Repressive Complex 2. PLoS Genet., 2015. 11(12): p. e1005660 [PMID:26642436] Fulcher N,Riha K Using Centromere Mediated Genome Elimination to Elucidate the Functional Redundancy of Candidate Telomere Binding Proteins in Arabidopsis thaliana. Front Genet, 2015. 6: p. 349 [PMID:26779251] Kotliński M, et al. Phylogeny-Based Systematization of Arabidopsis Proteins with Histone H1 Globular Domain. Plant Physiol., 2017. 174(1): p. 27-34 [PMID:28298478]