PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.09G029300.4.p
Common NameGLYMA_09G029300
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family MYB_related
Protein Properties Length: 316aa    MW: 35134.4 Da    PI: 9.9591
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.09G029300.4.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding28.63.3e-09534130
                         TSSS-HHHHHHHHHHHHHTTTT-HHHHHHH CS
      Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIart 30
                         +++WT+eE++ l+ +v ++G g W+tI + 
  Glyma.09G029300.4.p  5 KQKWTAEEEQALKAGVVKHGVGKWRTILKD 34
                         79*************************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129410.111151IPR017930Myb domain
SuperFamilySSF466898.58E-11258IPR009057Homeodomain-like
PfamPF002495.1E-6533IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.1E-9550IPR009057Homeodomain-like
CDDcd116603.64E-15672No hitNo description
SuperFamilySSF467859.25E-15134213IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM005267.0E-9134199IPR005818Linker histone H1/H5, domain H15
Gene3DG3DSA:1.10.10.102.7E-12135204IPR011991Winged helix-turn-helix DNA-binding domain
PROSITE profilePS5150423.783136204IPR005818Linker histone H1/H5, domain H15
PfamPF005382.9E-7139197IPR005818Linker histone H1/H5, domain H15
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006334Biological Processnucleosome assembly
GO:0000786Cellular Componentnucleosome
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 316 aa     Download sequence    Send to blast
MGAPKQKWTA EEEQALKAGV VKHGVGKWRT ILKDPEFSSV LYLRSNVDLK VWLPCWLHLL  60
MFYFVEDKWR NLSVMANGWS SREKSRLSVR RVHQVPRQDE NSMAITAVAP SDEEIVDVKP  120
LQVSRDMVHI PGPKRSNLSL DKLIMEAITC LKENGGSNKT AIAAFIEDQY WALPGLKSML  180
SAKLKFLTAS GKLIKVNRKY RIAPIAAYSD RRRNSSVLYL EGRQKASMKI DRDETNILTR  240
SQIDLELEKI RSMTPQEAAA FAARAVAEAE AAIAEAEEAA KEAEAAEADA EAAQAFADAT  300
TKSAKGRKSP KRIHA*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Gma.328340.0cotyledon| epicotyl| meristem| seed coat| somatic embryo
Functional Description ? help Back to Top
Source Description
UniProtBinds preferentially double-stranded telomeric repeats. {ECO:0000269|PubMed:19102728}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.09G029300.4.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0983180.0BT098318.1 Soybean clone JCVI-FLGm-23G7 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001341119.11e-180MYB transcription factor isoform 1
RefseqNP_001341120.11e-180MYB transcription factor isoform 1
RefseqXP_028180708.11e-180telomere repeat-binding factor 1-like
RefseqXP_028180709.11e-180telomere repeat-binding factor 1-like
SwissprotQ8VWK41e-91TRB1_ARATH; Telomere repeat-binding factor 1
TrEMBLI1L0K00.0I1L0K0_SOYBN; Uncharacterized protein
STRINGGLYMA09G03390.10.0(Glycine max)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G49950.31e-92telomere repeat binding factor 1
Publications ? help Back to Top
  1. Alexandrov NN, et al.
    Features of Arabidopsis genes and genome discovered using full-length cDNAs.
    Plant Mol. Biol., 2006. 60(1): p. 69-85
    [PMID:16463100]
  2. Schrumpfová PP, et al.
    Telomere repeat binding proteins are functional components of Arabidopsis telomeres and interact with telomerase.
    Plant J., 2014. 77(5): p. 770-81
    [PMID:24397874]
  3. Liang SC, et al.
    Kicking against the PRCs - A Domesticated Transposase Antagonises Silencing Mediated by Polycomb Group Proteins and Is an Accessory Component of Polycomb Repressive Complex 2.
    PLoS Genet., 2015. 11(12): p. e1005660
    [PMID:26642436]
  4. Fulcher N,Riha K
    Using Centromere Mediated Genome Elimination to Elucidate the Functional Redundancy of Candidate Telomere Binding Proteins in Arabidopsis thaliana.
    Front Genet, 2015. 6: p. 349
    [PMID:26779251]
  5. Kotliński M, et al.
    Phylogeny-Based Systematization of Arabidopsis Proteins with Histone H1 Globular Domain.
    Plant Physiol., 2017. 174(1): p. 27-34
    [PMID:28298478]