PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Glyma.09G034100.1.p

Common Name

GLYMA_09G034100, LOC102661343

Organism

Glycine max

Taxonomic ID

3847

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja

Family

C2H2

Protein Properties

Length: 344aa MW: 39118.5 Da PI: 7.4641

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Glyma.09G034100.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	12.8	0.00037	24	44	1	21
EEETTTTEEESSHHHHHHHHH CS zf-C2H2 1 ykCpdCgksFsrksnLkrHir 21 y C++C k F ++ L H+r Glyma.09G034100.1.p 24 YHCSYCEKAFENSQGLGDHQR 44 89*****************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF57667	6.61E-5	20	47	No hit	No description
Gene3D	G3DSA:3.30.160.60	7.7E-5	21	44	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profile	PS50157	10.076	24	51	IPR007087	Zinc finger, C2H2

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003676	Molecular Function	nucleic acid binding
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 344 aa Download sequence Send to blast
MFTFMMNLSS NSSKENGKRK EKGYHCSYCE KAFENSQGLG DHQRLYEVEI KQHNNQMIHF 60 QNSKDVTKSN PGHGDALMKA LSRGTTNNPY VTKGNYYGGY SREDHNSLFM PPNYSSARTD 120 NASLVTSIQY KETIPFSQSV DYPIYMSSFS NHIGGASSSI NHQFDASNPQ FFIDSFSKPF 180 KSNFWKNEHN DPNLTYPVLV RNSSLPGYHM ADFSLWNFNT NKFPSPIEPN VVDTQINFVG 240 SNNSYSYNVD QIYEKVKNHN RDEVQEKIPM MNPPKMPNIN FGPLVNHGIE MLQKKEAWFS 300 TKETKLKAVE AIFGKDEGKN ASTSKSANFI KEQEVDLDLS LHL*

Sequence ? help Back to Top

Protein Sequence Length: 344 aa Download sequence Send to blast

MFTFMMNLSS NSSKENGKRK EKGYHCSYCE KAFENSQGLG DHQRLYEVEI KQHNNQMIHF  60
QNSKDVTKSN PGHGDALMKA LSRGTTNNPY VTKGNYYGGY SREDHNSLFM PPNYSSARTD  120
NASLVTSIQY KETIPFSQSV DYPIYMSSFS NHIGGASSSI NHQFDASNPQ FFIDSFSKPF  180
KSNFWKNEHN DPNLTYPVLV RNSSLPGYHM ADFSLWNFNT NKFPSPIEPN VVDTQINFVG  240
SNNSYSYNVD QIYEKVKNHN RDEVQEKIPM MNPPKMPNIN FGPLVNHGIE MLQKKEAWFS  300
TKETKLKAVE AIFGKDEGKN ASTSKSANFI KEQEVDLDLS LHL*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Glyma.09G034100.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_014617237.1	0.0	uncharacterized protein LOC102661343 isoform X1
TrEMBL	A0A0R0I387	0.0	A0A0R0I387_SOYBN; Uncharacterized protein
STRING	GLYMA09G03881.1	0.0	(Glycine max)

Link Out ? help Back to Top
Phytozome	Glyma.09G034100.1.p
Entrez Gene	102661343