PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.09G038900.2.p
Common NameGLYMA_09G038900
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family MYB_related
Protein Properties Length: 248aa    MW: 27824.7 Da    PI: 4.3133
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.09G038900.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding26.11.9e-082252448
                         HHHHHHHHTTTS-HHHHHHHHHHHT CS
      Myb_DNA-binding 24 WktIartmgkgRtlkqcksrwqkyl 48
                         W+ Ia +++ gRt++++k++w+++l
  Glyma.09G038900.2.p  2 WSVIAGHLP-GRTDNEIKNYWNSHL 25
                         *********.************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129416.061129IPR017930Myb domain
Gene3DG3DSA:1.10.10.606.4E-12226IPR009057Homeodomain-like
SuperFamilySSF466894.24E-7235IPR009057Homeodomain-like
CDDcd001671.08E-5225No hitNo description
PfamPF002493.7E-6225IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 248 aa     Download sequence    Send to blast
MWSVIAGHLP GRTDNEIKNY WNSHLRRKIY CFMRSLNESL PPIDMAAINS ATSKRRVRGS  60
RNKPTTEEEK NIALSQNSFE SMPSCNREEG EEISMMDACY EMEGITVSSK AASYPSLEDS  120
LGPYHHWSDD EIMKLSNMFE NGVLVNPCGN DLTLKEEPNG NECGQMNVDV MGTDQSKNNG  180
VWNSSNGESG EWYPNCSSVN SVIDYQWSDW DMGGSVQSNN QWNLCDDQVM NCLWSTGIGE  240
INYGFHP*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Gma.158080.0cotyledon
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.09G038900.2.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003533213.10.0transcription factor MYB13
RefseqXP_028180329.10.0transcription factor MYB13-like
TrEMBLK7LBQ30.0K7LBQ3_SOYBN; Uncharacterized protein
STRINGGLYMA09G04370.10.0(Glycine max)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G47460.11e-14myb domain protein 12