PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.09G040000.2.p
Common NameGLYMA_09G040000, LOC100781087
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family ARR-B
Protein Properties Length: 637aa    MW: 69853.6 Da    PI: 6.513
Description ARR-B family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.09G040000.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like86.62.5e-27207260155
              G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                          kpr++W+ eLH++F+ +v+qL G++kA+Pk+ilelm+v+gLt+e+v+SHLQkYRl
  Glyma.09G040000.2.p 207 KPRVVWSVELHQQFMAVVNQL-GIDKAVPKKILELMNVPGLTRENVASHLQKYRL 260
                          79*******************.********************************8 PP
2Response_reg75.71.8e-25311391109
                          EEEESSSHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHH..ESEEEEESSCTTSEHHHHHHHHHHHTTTSEEEEEESTTTHHHHHH CS
         Response_reg   1 vlivdDeplvrellrqalekegyeevaeaddgeealellkekd..pDlillDiempgmdGlellkeireeepklpiivvtahgeeedale 88 
                          vl+vdD+p+ +++l+++l+   y ev+ ++ +e al ll+e++  +D++l D+ mp+mdG++ll++i  e  +lp+i+++a + ++ + +
  Glyma.09G040000.2.p  31 VLVVDDDPTCLMILERMLRACLY-EVTKCKRAEVALSLLRENKngFDIVLSDVHMPDMDGFKLLEHIGLEM-DLPVIMMSADDGKQVVMK 118
                          89*****************9999.***************999999**********************6654.8***************** PP

                          HHHTTESEEEESS--HHHHHH CS
         Response_reg  89 alkaGakdflsKpfdpeelvk 109
                           +  Ga d+l Kp+ +e+l +
  Glyma.09G040000.2.p 119 GVTHGACDYLIKPVRIEALKN 139
                          *****************9986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PIRSFPIRSF0363929.0E-1744628IPR017053Response regulator B-type, plant
Gene3DG3DSA:3.40.50.23001.1E-4028172No hitNo description
SuperFamilySSF521726.4E-3528148IPR011006CheY-like superfamily
SMARTSM004489.1E-3029141IPR001789Signal transduction response regulator, receiver domain
PROSITE profilePS5011042.3930145IPR001789Signal transduction response regulator, receiver domain
PfamPF000729.9E-2331139IPR001789Signal transduction response regulator, receiver domain
CDDcd001562.40E-2732144No hitNo description
SuperFamilySSF466891.33E-19204264IPR009057Homeodomain-like
PROSITE profilePS5129410.463204263IPR017930Myb domain
Gene3DG3DSA:1.10.10.606.8E-29206265IPR009057Homeodomain-like
TIGRFAMsTIGR015579.8E-24207260IPR006447Myb domain, plants
PfamPF002495.7E-7209259IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000160Biological Processphosphorelay signal transduction system
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 637 aa     Download sequence    Send to blast
MNLSHGKGST SSSPLKAGDT VSDQFPAGLR VLVVDDDPTC LMILERMLRA CLYEVTKCKR  60
AEVALSLLRE NKNGFDIVLS DVHMPDMDGF KLLEHIGLEM DLPVIMMSAD DGKQVVMKGV  120
THGACDYLIK PVRIEALKNI WQHVVRMRKN GLRDVEQSGS MEEGDRPPKG SDDGNYSSSV  180
NEAKSSKKRR DEDEEGDERD DSSTLKKPRV VWSVELHQQF MAVVNQLGID KAVPKKILEL  240
MNVPGLTREN VASHLQKYRL YLRRLSGVSQ QQGNLSNSFM SSQEATFGGT SINGIDLQTL  300
SAAGQFPSQS LAKFQAAGLG RTTAKAGMPM SLSDQKNLFS FENPRLRFGE GSLQHLSNSK  360
PINLLHGILT NMEPKQLANL HQSTQPLGSL NMRVNSPATQ NKPLLMQMTQ SQPRGQLLSE  420
NASSHVTRYP SSLVQPTVPN GISSGVLGNA IAGTSNITTT YNPVQQNSSL LSFPMNQTNE  480
MSASNFHLRS TPGITSIPNK GMFHEEGTSG VKGSGGFVQG YDMFNDLHHQ KSHDWDLTNT  540
GMTYDASQHA NPLQGEGMHQ SSLQNIGQHH NNLLLDNSVR VKAERIPDPS CQINNLFSDQ  600
YGQEDLVSAF LKQQEGVGTA ENEFDFDGYS LDNIPV*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1irz_A9e-22206266464ARR10-B
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Gma.597040.0cotyledon| root
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Detected in the whole plant. Predominantly expressed in pollen. {ECO:0000269|PubMed:11370868, ECO:0000269|PubMed:15173562, ECO:0000269|PubMed:9891419}.
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that binds specifically to the DNA sequence 5'-[AG]GATT-3'. Functions as a response regulator involved in His-to-Asp phosphorelay signal transduction system. Phosphorylation of the Asp residue in the receiver domain activates the ability of the protein to promote the transcription of target genes. Could directly activate some type-A response regulators in response to cytokinins. Involved in the expression of nuclear genes for components of mitochondrial complex I. Promotes cytokinin-mediated leaf longevity. Involved in the ethylene signaling pathway in an ETR1-dependent manner and in the cytokinin signaling pathway. {ECO:0000269|PubMed:11370868, ECO:0000269|PubMed:11574878, ECO:0000269|PubMed:15282545, ECO:0000269|PubMed:16407152}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.09G040000.2.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150350.0AP015035.1 Vigna angularis var. angularis DNA, chromosome 2, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006586907.10.0two-component response regulator ARR2 isoform X2
SwissprotQ9ZWJ90.0ARR2_ARATH; Two-component response regulator ARR2
TrEMBLA0A0R0I3I00.0A0A0R0I3I0_SOYBN; Two-component response regulator
STRINGGLYMA09G04470.10.0(Glycine max)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G16110.10.0response regulator 2
Publications ? help Back to Top
  1. Takahashi N, et al.
    Cytokinins control endocycle onset by promoting the expression of an APC/C activator in Arabidopsis roots.
    Curr. Biol., 2013. 23(18): p. 1812-7
    [PMID:24035544]
  2. Ge XM, et al.
    Heterotrimeric G protein mediates ethylene-induced stomatal closure via hydrogen peroxide synthesis in Arabidopsis.
    Plant J., 2015. 82(1): p. 138-50
    [PMID:25704455]
  3. Takahashi N,Umeda M
    Cytokinins promote onset of endoreplication by controlling cell cycle machinery.
    Plant Signal Behav, 2014. 9(8): p. e29396
    [PMID:25763620]
  4. Kobayashi K, et al.
    Shoot Removal Induces Chloroplast Development in Roots via Cytokinin Signaling.
    Plant Physiol., 2017. 173(4): p. 2340-2355
    [PMID:28193764]
  5. Arnaud D, et al.
    Cytokinin-Mediated Regulation of Reactive Oxygen Species Homeostasis Modulates Stomatal Immunity in Arabidopsis.
    Plant Cell, 2017. 29(3): p. 543-559
    [PMID:28254779]
  6. Zhang TQ, et al.
    A Two-Step Model for de Novo Activation of WUSCHEL during Plant Shoot Regeneration.
    Plant Cell, 2017. 29(5): p. 1073-1087
    [PMID:28389585]
  7. Meng WJ, et al.
    Type-B ARABIDOPSIS RESPONSE REGULATORs Specify the Shoot Stem Cell Niche by Dual Regulation of WUSCHEL.
    Plant Cell, 2017. 29(6): p. 1357-1372
    [PMID:28576846]
  8. Zhang F,May A,Irish VF
    Type-B ARABIDOPSIS RESPONSE REGULATORs Directly Activate WUSCHEL.
    Trends Plant Sci., 2017. 22(10): p. 815-817
    [PMID:28886911]
  9. Takatsuka H,Higaki T,Umeda M
    Actin Reorganization Triggers Rapid Cell Elongation in Roots.
    Plant Physiol., 2018. 178(3): p. 1130-1141
    [PMID:30185441]