PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Glyma.09G052900.1.p

Common Name

GLYMA_09G052900, LOC100500521

Organism

Glycine max

Taxonomic ID

3847

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja

Family

ERF

Protein Properties

Length: 123aa MW: 14123.8 Da PI: 5.0929

Description

ERF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Glyma.09G052900.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	AP2	58.9	1.3e-18	11	62	2	56
AP2 2 gykGVrwdkkrgrWvAeIrdpse.ngkrkrfslgkfgtaeeAakaaiaarkklege 56 +y+GVr ++ +g++ AeIrdp++ r +lg+f+taeeAa+a+++a+ +l+g+ Glyma.09G052900.1.p 11 KYRGVRKRP-WGKFGAEIRDPTKpT---GRQWLGTFDTAEEAARAYDRAAIALRGA 62 8******.******97744...688********************995 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:3.30.730.10	2.8E-30	11	70	IPR001471	AP2/ERF domain
PROSITE profile	PS51032	23.499	11	69	IPR001471	AP2/ERF domain
CDD	cd00018	1.48E-30	11	70	No hit	No description
SuperFamily	SSF54171	2.16E-22	11	71	IPR016177	DNA-binding domain
Pfam	PF00847	1.0E-11	11	61	IPR001471	AP2/ERF domain
SMART	SM00380	8.9E-33	11	75	IPR001471	AP2/ERF domain
PRINTS	PR00367	6.8E-11	12	23	IPR001471	AP2/ERF domain
PRINTS	PR00367	6.8E-11	35	51	IPR001471	AP2/ERF domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 123 aa Download sequence Send to blast
MEKERGEEEV KYRGVRKRPW GKFGAEIRDP TKPTGRQWLG TFDTAEEAAR AYDRAAIALR 60 GALAILNFPH EFHFHLPFIL SNSSTKGNGS SFDKEVIELE YLDDKVLEEL LELEEKRRNN 120 ED*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5wx9_A	3e-30	6	106	9	114	Ethylene-responsive transcription factor ERF096
Search in ModeBase

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Gma.36612	0.0	epicotyl

Functional Description ? help Back to Top
Source	Description
UniProt	Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Glyma.09G052900.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	BT091458	0.0	BT091458.1 Soybean clone JCVI-FLGm-8C21 unknown mRNA.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	NP_001235553.1	8e-85	DNA-binding domain-containing protein
Swissprot	Q9LTC5	8e-37	ERF98_ARATH; Ethylene-responsive transcription factor ERF098
TrEMBL	C6T202	2e-83	C6T202_SOYBN; Uncharacterized protein
STRING	GLYMA09G05850.1	3e-84	(Glycine max)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF270	33	215
Representative plant	OGRP6	16	1718

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G43410.1	3e-16	ERF family protein

Link Out ? help Back to Top
Phytozome	Glyma.09G052900.1.p
Entrez Gene	100500521

Publications ? help Back to Top
Van den Broeck L, et al. From network to phenotype: the dynamic wiring of an Arabidopsis transcriptional network induced by osmotic stress. Mol. Syst. Biol., 2017. 13(12): p. 961 [PMID:29269383]