PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Glyma.09G060200.1.p

Common Name

GLYMA_09G060200, Glyma09g06770.1_like1, LOC100817978

Organism

Glycine max

Taxonomic ID

3847

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja

Family

bHLH

Protein Properties

Length: 245aa MW: 27883.9 Da PI: 6.1648

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Glyma.09G060200.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	44.9	2.1e-14	54	97	7	55
HHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS HLH 7 erErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55 Er+RR+++N++++ Lr+++P+ + K++Ka+i + A+eYI++L+ Glyma.09G060200.1.p 54 VSERNRRKKLNERLFALRSVVPNiS------KMDKASIIKDAIEYIQHLH 97 57*******************66......***************95 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	16.837	47	96	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	1.7E-18	48	113	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	4.52E-13	50	101	No hit	No description
Gene3D	G3DSA:4.10.280.10	3.0E-17	53	112	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	8.2E-16	53	102	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	6.0E-12	54	96	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 245 aa Download sequence Send to blast
MENIGEEYKH YWETNMFLQT QELDSWGLDE ALSGYYDSSS PDGAASSAAS KNIVSERNRR 60 KKLNERLFAL RSVVPNISKM DKASIIKDAI EYIQHLHEQE KIIQAEIMEL ESGMPRKSPS 120 YGFEQEQLPV VLRSKKKRTE QLYDSVTSRN TPIEVLELRV TYMGEKTVVV SLTCSKRTDT 180 MVKLCEVFES LKLKIITANI TSFSGRLLKT VFIEANEEEK DHLQIKIQTA IKALNNDPLS 240 PMSI*

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Gma.12279	0.0	flower\| hypocotyl\| meristem\| pod\| root

Expression -- Description ? help Back to Top
Source	Description
Uniprot	TISSUE SPECIFICITY: Expressed constitutively in roots, leaves, stems, and flowers. {ECO:0000269\|PubMed:12679534}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Glyma.09G060200.1.p

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	BT096690	0.0	BT096690.1 Soybean clone JCVI-FLGm-21E7 unknown mRNA.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	NP_001239951.1	0.0	transcription factor bHLH35-like
Refseq	XP_028181009.1	0.0	transcription factor bHLH35-like
Swissprot	Q2HIV9	6e-93	BH035_ARATH; Transcription factor bHLH35
TrEMBL	A0A445IXU3	1e-180	A0A445IXU3_GLYSO; Transcription factor bHLH35 isoform A
TrEMBL	C6TGE0	1e-180	C6TGE0_SOYBN; BHLH transcription factor
STRING	GLYMA09G06770.1	0.0	(Glycine max)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF3389	33	69
Representative plant	OGRP2753	13	32

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G57150.1	6e-86	bHLH family protein

Link Out ? help Back to Top
Phytozome	Glyma.09G060200.1.p
Entrez Gene	100817978

Publications ? help Back to Top
Chai C, et al. Soybean transcription factor ORFeome associated with drought resistance: a valuable resource to accelerate research on abiotic stress resistance. BMC Genomics, 2015. 16: p. 596 [PMID:26268547]