PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.09G068400.2.p
Common NameGLYMA_09G068400, LOC100793856
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family NF-YA
Protein Properties Length: 225aa    MW: 24683.7 Da    PI: 10.198
Description NF-YA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.09G068400.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1CBFB_NFYA104.97.2e-3366122158
            CBFB_NFYA   1 deplYVNaKQyqrIlkRRqkRakleeekkldeksrkpylheSRhkhAlrRpRgsgGrF 58 
                          d p+YVNaKQy++Il+RRq+Rakle+++kl +k+rkpylheSRh+hAl+R RgsgGrF
  Glyma.09G068400.2.p  66 DGPIYVNAKQYHGILRRRQSRAKLEAQNKL-IKNRKPYLHESRHRHALNRVRGSGGRF 122
                          57****************************.**************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005217.7E-3764125IPR001289Nuclear transcription factor Y subunit A
PROSITE profilePS5115237.22465125IPR001289Nuclear transcription factor Y subunit A
PfamPF020454.1E-2868122IPR001289Nuclear transcription factor Y subunit A
PRINTSPR006168.0E-256890IPR001289Nuclear transcription factor Y subunit A
PROSITE patternPS0068607090IPR018362CCAAT-binding factor, conserved site
PRINTSPR006168.0E-2599122IPR001289Nuclear transcription factor Y subunit A
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0016602Cellular ComponentCCAAT-binding factor complex
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 225 aa     Download sequence    Send to blast
MPNLNPTLQV LASSYPYQIP KAHSSYPYGD PIFAYGPQAI SHPQMIPPML GLASTRVALP  60
LDLAEDGPIY VNAKQYHGIL RRRQSRAKLE AQNKLIKNRK PYLHESRHRH ALNRVRGSGG  120
RFLSTKQLAQ SNAEFVTGAH SGSDPTNRYQ KEHLSEVESH SSKDGDNSSF ITTCSDRPCL  180
SGNNVNFRQQ ECMFLGNSAN MGGSPQFSGG LTFGGAKQRT SVVR*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4awl_A5e-2366127263NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT ALPHA
Search in ModeBase
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in the whole plant, except roots. {ECO:0000269|PubMed:11867211}.
Functional Description ? help Back to Top
Source Description
UniProtStimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.09G068400.2.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0993700.0BT099370.1 Soybean clone JCVI-FLGm-13B20 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014617459.11e-167nuclear transcription factor Y subunit A-9 isoform X1
RefseqXP_028248029.11e-167nuclear transcription factor Y subunit A-3-like isoform X2
SwissprotQ9LNP63e-38NFYA8_ARATH; Nuclear transcription factor Y subunit A-8
TrEMBLA0A0R0IC471e-166A0A0R0IC47_SOYBN; Uncharacterized protein
STRINGGLYMA09G07960.41e-149(Glycine max)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G17590.41e-40nuclear factor Y, subunit A8
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Zhao H, et al.
    The Arabidopsis thaliana Nuclear Factor Y Transcription Factors.
    Front Plant Sci, 2016. 7: p. 2045
    [PMID:28119722]
  3. Djami-Tchatchou AT,Ntushelo K
    Expression Profile of Stress-responsive Arabidopsis thaliana miRNAs and their Target Genes in Response to Inoculation with Pectobacterium carotovorum subsp. carotovorum.
    Pak. J. Biol. Sci., 2017. 20(3): p. 147-153
    [PMID:29023006]