PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.09G102700.1.p
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family B3
Protein Properties Length: 75aa    MW: 8398.8 Da    PI: 6.5657
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.09G102700.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B334.15e-114624098
                         ETTS-EEEEEE....EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE- CS
                   B3 40 desgrsWevkliy..rkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfr 98
                         +++g++W +++++  +++s++yvl+ G     ++ +L++gD+v+F+l +  e++lv+++++
  Glyma.09G102700.1.p  4 SPKGKEWIFQFRFwpNNNSKMYVLE-GVTPCIQSMQLQAGDIVTFSLLE-LEGRLVMGFRK 62
                         689********9988899999***9.********************987.55656666665 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5086310.038164IPR003340B3 DNA binding domain
PfamPF023626.9E-9463IPR003340B3 DNA binding domain
CDDcd100173.73E-9462No hitNo description
Gene3DG3DSA:2.40.330.101.6E-13565IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019365.89E-8562IPR015300DNA-binding pseudobarrel domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 75 aa     Download sequence    Send to blast
MDASPKGKEW IFQFRFWPNN NSKMYVLEGV TPCIQSMQLQ AGDIVTFSLL ELEGRLVMGF  60
RKASSVMPSD QVIV*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5yzy_C7e-2966666126B3 domain-containing transcription repressor VAL1
5yzz_C7e-2966666126B3 domain-containing transcription repressor VAL1
5z00_C7e-2966666126B3 domain-containing transcription repressor VAL1
5z00_G7e-2966666126B3 domain-containing transcription repressor VAL1
5z00_K7e-2966666126B3 domain-containing transcription repressor VAL1
5z00_M7e-2966666126B3 domain-containing transcription repressor VAL1
6j9a_A8e-2966667127B3 domain-containing transcription repressor VAL1
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Gma.37245e-97cotyledon| flower| seed coat| somatic embryo| stem
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional repressor of gene expression involved in embryonic pathways, such as LEC1, ABI3, and FUS3. Repressor of the sugar-inducible genes involved in the seed maturation program in seedlings. Plays an essential role in regulating the transition from seed maturation to seedling growth. Functionally redundant with VAL1/HSI2. {ECO:0000269|PubMed:17158584, ECO:0000269|PubMed:17267611}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.09G102700.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2352168e-68AC235216.1 Glycine max strain Williams 82 clone GM_WBb0020M15, complete sequence.
GenBankAC2353318e-68AC235331.1 Glycine max strain Williams 82 clone GM_WBb0082I16, complete sequence.
GenBankAC2353948e-68AC235394.1 Glycine max strain Williams 82 clone GM_WBb0118C23, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019425640.18e-37PREDICTED: B3 domain-containing protein Os07g0563300-like isoform X3
SwissprotQ5CCK45e-31VAL2_ARATH; B3 domain-containing transcription repressor VAL2
TrEMBLA0A368UHS86e-48A0A368UHS8_SOYBN; Uncharacterized protein
STRINGGLYMA09G15521.11e-48(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF2993422
Representative plantOGRP12361446
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G32010.12e-33HSI2-like 1
Publications ? help Back to Top
  1. Jia H,McCarty DR,Suzuki M
    Distinct roles of LAFL network genes in promoting the embryonic seedling fate in the absence of VAL repression.
    Plant Physiol., 2013. 163(3): p. 1293-305
    [PMID:24043445]
  2. Chhun T, et al.
    HSI2 Repressor Recruits MED13 and HDA6 to Down-Regulate Seed Maturation Gene Expression Directly During Arabidopsis Early Seedling Growth.
    Plant Cell Physiol., 2016. 57(8): p. 1689-706
    [PMID:27335347]
  3. Yuan W, et al.
    A cis cold memory element and a trans epigenome reader mediate Polycomb silencing of FLC by vernalization in Arabidopsis.
    Nat. Genet., 2016. 48(12): p. 1527-1534
    [PMID:27819666]
  4. Li C,Cui Y
    A DNA element that remembers winter.
    Nat. Genet., 2016. 48(12): p. 1451-1452
    [PMID:27898079]