PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.09G113000.2.p
Common NameGLYMA_09G113000
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family G2-like
Protein Properties Length: 389aa    MW: 42929.2 Da    PI: 7.2372
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.09G113000.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like1017.9e-32221275155
              G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                          k+r+rWt+eLHe+Fve+v++LGG+ekAtPk+il+lm+ +gLt+ hvkSHLQkYR+
  Glyma.09G113000.2.p 221 KTRIRWTQELHEKFVECVNRLGGAEKATPKAILRLMDSDGLTIFHVKSHLQKYRI 275
                          68****************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS512949.617218278IPR017930Myb domain
SuperFamilySSF466892.33E-17219275IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.609.8E-29219276IPR009057Homeodomain-like
TIGRFAMsTIGR015572.4E-23221276IPR006447Myb domain, plants
PfamPF002499.1E-9225274IPR001005SANT/Myb domain
PfamPF143795.8E-21305351IPR025756MYB-CC type transcription factor, LHEQLE-containing domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 389 aa     Download sequence    Send to blast
MRQASNMGTS NQPLAMASGG GVEQEPNIGQ TKSSSSIISR FESPASAFYA TEMCMGGFPQ  60
YDSQIGNNLS LMSQSSKFSN MEFPLYQSPR QSLFMASLAN QPPPNFDLSN PLQEILKSHL  120
NSDQCVRSPE DSNKIPYGDF PGSNFLPIEQ HKFFIDDAIS TGISPSIPSK GNQDQSVSCG  180
PFNLPSAQLS FSSQQEMLSP TGSMSTTSGN SNSNGPVVSS KTRIRWTQEL HEKFVECVNR  240
LGGAEKATPK AILRLMDSDG LTIFHVKSHL QKYRIAKFMP QPTQGKSDKR TNVENVHLDV  300
KTGLQIKEAL QLQLDVQRRL HEQLEIQRKL QLRIEEQGKQ LKMMFDQQQK TSNGHLITEN  360
NDRPISSKDV LVSTSDGSEN SLFSTNIS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j4k_A3e-23221278259Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B3e-23221278259Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_A3e-23221278158Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B3e-23221278158Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C3e-23221278158Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D3e-23221278158Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A3e-23221278259Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C3e-23221278259Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D3e-23221278259Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F3e-23221278259Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H3e-23221278259Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J3e-23221278259Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.09G113000.2.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2361410.0AC236141.2 Glycine max clone GM_WBb0004A16, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006587215.10.0myb family transcription factor PHL5 isoform X1
RefseqXP_028180223.10.0myb family transcription factor PHL5-like isoform X1
TrEMBLA0A0R0IG190.0A0A0R0IG19_SOYBN; Uncharacterized protein
STRINGGLYMA09G17404.10.0(Glycine max)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G06800.17e-70G2-like family protein