PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.09G131400.2.p
Common NameGLYMA_09G131400
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family MYB_related
Protein Properties Length: 257aa    MW: 28389.8 Da    PI: 10.145
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.09G131400.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding39.31.5e-12109153147
                          TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
      Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                          r +WT+ E++++++a++++  + Wk+I + +g  ++  q++s+ qky
  Glyma.09G131400.2.p 109 RENWTEPEHDKFLEAIQLFDRD-WKKIEAFVG-SKSVIQIRSHAQKY 153
                          789*****************77.*********.*************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466891.2E-15103159IPR009057Homeodomain-like
PROSITE profilePS5129413.911104158IPR017930Myb domain
TIGRFAMsTIGR015576.8E-18107156IPR006447Myb domain, plants
Gene3DG3DSA:1.10.10.604.5E-6108149IPR009057Homeodomain-like
SMARTSM007175.2E-10108156IPR001005SANT/Myb domain
PfamPF002492.7E-10109153IPR001005SANT/Myb domain
CDDcd001675.29E-8111154No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 257 aa     Download sequence    Send to blast
MAKVVMTNEE LFNLVLHVEC RTSAPNICSY INLPYVSPQI PHLTLSLKSL KMVSKNPNPP  60
EGFYLDPSGG MALPGKPPFA SVSAAAAAAN SSEDAAKKIR KPYTITKSRE NWTEPEHDKF  120
LEAIQLFDRD WKKIEAFVGS KSVIQIRSHA QKYFLKVQKS GTSEHLPPPR PKRKAAHPYP  180
QKASKNAPVL SQVSGRFQSS SALLEPGYIS KNDAPPMLKT PIMNTVSSSW SNNTLQTVNL  240
SPGIKCYNFL YLKFCL*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Gma.353200.0root
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.09G131400.2.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0932340.0BT093234.1 Soybean clone JCVI-FLGm-17C23 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001240048.11e-128uncharacterized protein LOC100783949
SwissprotQ8H0W32e-71RVE6_ARATH; Protein REVEILLE 6
TrEMBLA0A0R0IGU50.0A0A0R0IGU5_SOYBN; Uncharacterized protein
STRINGGLYMA16G29740.11e-128(Glycine max)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G52660.21e-53MYB_related family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Gray JA,Shalit-Kaneh A,Chu DN,Hsu PY,Harmer SL
    The REVEILLE Clock Genes Inhibit Growth of Juvenile and Adult Plants by Control of Cell Size.
    Plant Physiol., 2017. 173(4): p. 2308-2322
    [PMID:28254761]