PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.09G133600.1.p
Common NameGLYMA_09G133600
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family GRAS
Protein Properties Length: 541aa    MW: 59238.9 Da    PI: 8.6808
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.09G133600.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS230.11e-70281540119374
                 GRAS 119 isqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrledleleeLrvkpgEalaVnlvl 208
                          i +G Q++ Ll+aL++R ++   ++i +v++  +g +e+++++g+ L+ +Ae+l+++fef++++++++++l+ e+L ++ +++l Vn+++
  Glyma.09G133600.1.p 281 IVEGKQYLHLLNALSAR-GQNVAVKIAAVAE--KGGEERVRAVGDMLRLLAERLRIRFEFKIVATQKIAELTRESLGCDADDVLMVNFAF 367
                          789*************9.66689********..77***************************9999************************ PP

                 GRAS 209 qlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsl.eaklpres....eerikvErellgre 293
                          +l +++desvs e++rde+L+ vk+l P+vv+vveqe++ n+++Fl+r++e+l+yy al++s+ ++++++++    ++r+ +E+  l+r+
  Glyma.09G133600.1.p 368 KLNKIPDESVSPENPRDELLRRVKRLAPRVVTVVEQEINGNTAPFLARVAETLSYYGALLESIeATTVGKDNsinnSDRVRLEEG-LSRK 456
                          ***************************************************************77788887778879999****9.**** PP

                 GRAS 294 ivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvk...sdgyrveeesgslvlgWkdrpLvsvSaWr 374
                          + n vaceg++r+er+e ++kWr+r+++aGF+  pls+++++++k+ l   +   + g +v+ee+g +++gW++r+L+++SaWr
  Glyma.09G133600.1.p 457 LHNSVACEGRDRVERCEVFGKWRARMSMAGFELKPLSQSMVESIKARLISANnrvNSGLTVKEENGGICFGWMGRTLTVASAWR 540
                          *****************************************99887664443236789*************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098526.663125517IPR005202Transcription factor GRAS
PfamPF035143.6E-68281540IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
Sequence ? help Back to Top
Protein Sequence    Length: 541 aa     Download sequence    Send to blast
MSSPGFPGGG SASEFFAGAG VFGGRSIPGA TMNNPNAAAS ATINNLHPLY RTQQQQNLPA  60
MFLDPSSQIA QRQTPTFIGK RTLTEFQAYN QTNNNPNHVL SNLLLRSVKP RTSLYHTSMD  120
FPVPELQNQN LYSNQTQRFG VPLLHQLRPQ PINLPNNGPV PMTGPNFGYR NSNLGLPQNQ  180
NRVHSSEPEK KIMDHRLLEL EKQLLEDNDD EGEADAASVI TTSEWSETYQ NLISPSPVQK  240
PVLTTTSPTS STTSSTSSSS SVASPASGCS KQTLMEAASA IVEGKQYLHL LNALSARGQN  300
VAVKIAAVAE KGGEERVRAV GDMLRLLAER LRIRFEFKIV ATQKIAELTR ESLGCDADDV  360
LMVNFAFKLN KIPDESVSPE NPRDELLRRV KRLAPRVVTV VEQEINGNTA PFLARVAETL  420
SYYGALLESI EATTVGKDNS INNSDRVRLE EGLSRKLHNS VACEGRDRVE RCEVFGKWRA  480
RMSMAGFELK PLSQSMVESI KARLISANNR VNSGLTVKEE NGGICFGWMG RTLTVASAWR  540
*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5hyz_A4e-2127054097375GRAS family transcription factor containing protein, expressed
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Gma.223720.0cotyledon| leaf| root| stem
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in seedlings, roots, leaves and siliques. {ECO:0000269|PubMed:10341448, ECO:0000269|PubMed:18500650}.
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in plant development. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.09G133600.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014617163.10.0scarecrow-like protein 8
SwissprotQ9FYR71e-103SCL8_ARATH; Scarecrow-like protein 8
TrEMBLA0A0R0I7X70.0A0A0R0I7X7_SOYBN; Uncharacterized protein
STRINGGLYMA09G24740.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF62663151
Representative plantOGRP7599918
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G52510.11e-105SCARECROW-like 8