PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.09G149900.2.p
Common NameGLYMA_09G149900, LOC100795953
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family bHLH
Protein Properties Length: 211aa    MW: 23955.3 Da    PI: 8.1168
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.09G149900.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH38.32.5e-122978455
                         HHHHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS
                  HLH  4 ahnerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55
                         +h+e Er+RR+++ +  ++Lr+llP       ++K s ++ + +A++YI++Lq
  Glyma.09G149900.2.p 29 MHKETERQRRQEMGKLCATLRSLLPLeY---IKGKRSTSDYVNEAMNYINHLQ 78
                         7*************************77...*********************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000831.21E-102382No hitNo description
SuperFamilySSF474591.16E-152493IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088813.4592577IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.3E-112793IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000107.6E-102978IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.8E-53183IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006357Biological Processregulation of transcription from RNA polymerase II promoter
GO:0090575Cellular ComponentRNA polymerase II transcription factor complex
GO:0000977Molecular FunctionRNA polymerase II regulatory region sequence-specific DNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 211 aa     Download sequence    Send to blast
MKGQGKSSKH LHVEEKEDFI AMDENKKWMH KETERQRRQE MGKLCATLRS LLPLEYIKGK  60
RSTSDYVNEA MNYINHLQNK VKQLQAKRDE LVKVSNLKSN ICSENESSSS STTHLPPLVS  120
VHPFPGGLEI MCGYSFGKSV FPMSRVLDIL LKEGINVVST TSIRRDGRFI HTIRSEDPNH  180
LNMTGADYSE LQIKLTEAIS LQETLPEHEN *
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Gma.201520.0root
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.09G149900.2.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0927390.0BT092739.1 Soybean clone JCVI-FLGm-11L13 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006587371.11e-156transcription factor bHLH118 isoform X2
RefseqXP_028180242.11e-156transcription factor bHLH118-like isoform X2
TrEMBLI1L3H31e-155I1L3H3_SOYBN; Uncharacterized protein
STRINGGLYMA09G27610.11e-155(Glycine max)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G51790.14e-31bHLH family protein