PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.09G149900.3.p
Common NameGLYMA_09G149900, LOC100795953
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family bHLH
Protein Properties Length: 190aa    MW: 21574.6 Da    PI: 8.1005
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.09G149900.3.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH38.52e-12857455
                         HHHHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS
                  HLH  4 ahnerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55
                         +h+e Er+RR+++ +  ++Lr+llP       ++K s ++ + +A++YI++Lq
  Glyma.09G149900.3.p  8 MHKETERQRRQEMGKLCATLRSLLPLeY---IKGKRSTSDYVNEAMNYINHLQ 57
                         7*************************77...*********************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000837.94E-11261No hitNo description
SuperFamilySSF474599.16E-16372IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088813.459456IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.8E-11672IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000106.3E-10857IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.8E-51062IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006357Biological Processregulation of transcription from RNA polymerase II promoter
GO:0090575Cellular ComponentRNA polymerase II transcription factor complex
GO:0000977Molecular FunctionRNA polymerase II regulatory region sequence-specific DNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 190 aa     Download sequence    Send to blast
MDENKKWMHK ETERQRRQEM GKLCATLRSL LPLEYIKGKR STSDYVNEAM NYINHLQNKV  60
KQLQAKRDEL VKVSNLKSNI CSENESSSSS TTHLPPLVSV HPFPGGLEIM CGYSFGKSVF  120
PMSRVLDILL KEGINVVSTT SIRRDGRFIH TIRSEDPNHL NMTGADYSEL QIKLTEAISL  180
QETLPEHEN*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Gma.201520.0root
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.09G149900.3.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0927390.0BT092739.1 Soybean clone JCVI-FLGm-11L13 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003534028.11e-140transcription factor bHLH118 isoform X1
RefseqXP_006587371.11e-140transcription factor bHLH118 isoform X2
RefseqXP_028180241.11e-140transcription factor bHLH118-like isoform X1
RefseqXP_028180242.11e-140transcription factor bHLH118-like isoform X2
TrEMBLA0A445J1681e-138A0A445J168_GLYSO; Transcription factor bHLH126 (Fragment)
STRINGGLYMA09G27610.11e-139(Glycine max)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G51790.12e-31bHLH family protein